Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 HNRNPLP1-201ENST00000421896 1501 ntBASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 KRT8P5-201ENST00000592443 1458 ntBASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 NXPE4-201ENST00000375478 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 LINC01678-202ENST00000424921 475 ntTSL 3 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 AC010395.2-201ENST00000509899 904 ntBASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 SMCO4-202ENST00000525141 889 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 NAT9-204ENST00000578822 839 ntTSL 3 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 AC022211.3-201ENST00000584339 400 ntTSL 3 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 AL109983.1-201ENST00000603234 646 ntBASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 AC112702.1-201ENST00000623712 366 ntBASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 DTX2P1-201ENST00000425797 1633 ntBASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 ALLC-201ENST00000252505 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SHANK3Q9BYB0 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 BSCL2-203ENST00000360796 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 CREBRF-203ENST00000520420 1660 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 SERPINB8P1-201ENST00000401898 377 ntBASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 DIS3L2P1-201ENST00000509197 559 ntBASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 LILRA5-201ENST00000432233 1363 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 VOPP1-206ENST00000428097 1671 ntTSL 3 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 AC073488.1-201ENST00000416620 1600 ntBASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 AC009093.9-201ENST00000566038 1611 ntBASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 TUBA3GP-201ENST00000410028 1325 ntBASIC17.28■□□□□ 0.36
SHANK3Q9BYB0 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 CD74-203ENST00000377795 1138 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 PGAM1P10-201ENST00000402426 761 ntBASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 PPY-202ENST00000587006 431 ntTSL 3 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 HTR7P1-202ENST00000624664 4411 ntBASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 AC106872.9-201ENST00000512437 1393 ntBASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 AC012531.1-201ENST00000562848 2680 ntBASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHANK3Q9BYB0 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 MYADM-204ENST00000391770 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 AC016650.1-201ENST00000502834 708 ntTSL 2 BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 NUP210P2-201ENST00000510577 282 ntBASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 NEMF-210ENST00000556672 590 ntTSL 2 BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 ZNF268-219ENST00000611984 583 ntTSL 5 BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 SERPING1-213ENST00000619430 634 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SHANK3Q9BYB0 AC245369.8-201ENST00000636589 306 ntBASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms