Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FBXO25-201ENST00000276326 2104 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AC098590.1-201ENST00000468126 897 ntBASIC8.58□□□□□ -1.04
LINC00643Q86TS7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 FGF14-AS2-201ENST00000606448 1074 ntBASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AP000525.1-201ENST00000608286 694 ntBASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AC104506.1-201ENST00000609247 429 ntBASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AC068338.3-201ENST00000617892 418 ntBASIC8.58□□□□□ -1.04
LINC00643Q86TS7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 GAPDHP72-202ENST00000636791 2141 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ESPL1-201ENST00000257934 6623 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 PAAF1-215ENST00000544909 1802 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 DNM3-206ENST00000520906 4454 ntTSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 PELI1-201ENST00000358912 3750 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 HDAC6-201ENST00000334136 4190 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 SLC7A3-202ENST00000374299 2236 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ECHDC1-209ENST00000454591 1515 ntTSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 LIN28B-203ENST00000637759 2635 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ELP2-202ENST00000351393 2453 ntTSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 SPRTN-204ENST00000391858 3559 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AC022098.1-201ENST00000588387 2861 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 AP001993.1-201ENST00000527317 2337 ntTSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ROR2-201ENST00000375708 4096 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 DCLK3-203ENST00000636136 5446 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 STYX-201ENST00000354586 4857 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ZNF75D-201ENST00000370764 2977 ntAPPRIS ALT2 TSL 2 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 POFUT2-213ENST00000612472 2959 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 PRDM7-202ENST00000449207 2008 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 ZNF814-215ENST00000614383 2006 ntTSL 5 BASIC8.58□□□□□ -1.04
LINC00643Q86TS7 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 GOLGA8EP-202ENST00000620011 5241 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 EZR-201ENST00000337147 3068 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 IQCK-202ENST00000320394 3482 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 PSAPL1-201ENST00000319098 4680 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 UBASH3A-202ENST00000319294 2504 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 KIAA1671-201ENST00000358431 10490 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 LINC01447-201ENST00000429010 2761 ntTSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 PEX5L-213ENST00000476138 2361 ntAPPRIS ALT2 TSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 PDE4DIP-237ENST00000585156 8439 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TRIM37-202ENST00000393065 3548 ntTSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AIFM1P1-201ENST00000413342 1841 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AL365181.1-201ENST00000564032 1828 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 SERPINA10-202ENST00000393096 2451 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 FAM84A-202ENST00000331243 3765 ntAPPRIS P1 TSL 3 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TECTB-201ENST00000369422 2713 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 FAIM2-205ENST00000550890 2094 ntTSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TSPAN9-206ENST00000537971 4284 ntAPPRIS P1 TSL 3 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 G3BP1-201ENST00000356245 2803 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TSPY22P-201ENST00000427496 604 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AC007969.1-201ENST00000433675 447 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 SLC25A3P1-201ENST00000443844 931 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 INE1-201ENST00000456273 945 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 VENTXP5-201ENST00000523979 775 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AL009183.1-201ENST00000603760 355 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 EPB42-201ENST00000300215 4553 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 NRG1-212ENST00000521670 1769 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 MROH1-211ENST00000544576 3673 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 GP6-203ENST00000417454 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 AC073476.3-201ENST00000563949 2507 ntBASIC8.57□□□□□ -1.04
LINC00643Q86TS7 FAM46A-202ENST00000369754 5664 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 UNC45A-201ENST00000394275 4002 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 BEST3-201ENST00000266661 1876 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 ETV5-201ENST00000306376 4111 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 CDC14A-201ENST00000336454 4137 ntAPPRIS ALT1 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TMC3-201ENST00000359440 4641 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
LINC00643Q86TS7 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms