Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
VPS13CQ709C8 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
VPS13CQ709C8 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 AP001046.1-201ENST00000435702 2816 ntTSL 2 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
VPS13CQ709C8 CDC20P1-201ENST00000488829 1500 ntBASIC11.16□□□□□ -0.62
VPS13CQ709C8 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
VPS13CQ709C8 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 MARCKSL1P2-201ENST00000401037 976 ntBASIC11.16□□□□□ -0.62
VPS13CQ709C8 PGAM1P10-201ENST00000402426 761 ntBASIC11.16□□□□□ -0.62
VPS13CQ709C8 AC138392.1-201ENST00000427577 921 ntBASIC11.16□□□□□ -0.62
VPS13CQ709C8 AC131235.2-201ENST00000445553 1057 ntBASIC11.16□□□□□ -0.62
VPS13CQ709C8 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 AK2-208ENST00000487289 920 ntTSL 2 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
VPS13CQ709C8 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC11.16□□□□□ -0.62
VPS13CQ709C8 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
VPS13CQ709C8 FAM90A12P-201ENST00000519497 2375 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 FAM90A24P-201ENST00000520792 2369 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 KRT18P45-201ENST00000515347 1333 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 IGHV7-56-201ENST00000518372 351 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 AC211476.2-201ENST00000608799 708 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 RBP1-206ENST00000617459 667 ntTSL 2 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 RPS9-213ENST00000626547 476 ntTSL 2 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 AC024475.2-201ENST00000312173 879 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 HNRNPA1P59-201ENST00000430583 918 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC11.15□□□□□ -0.62
VPS13CQ709C8 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 AC005840.4-201ENST00000541242 2494 ntBASIC11.15□□□□□ -0.62
VPS13CQ709C8 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
VPS13CQ709C8 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
VPS13CQ709C8 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC11.15□□□□□ -0.63
VPS13CQ709C8 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.63
VPS13CQ709C8 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
VPS13CQ709C8 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
VPS13CQ709C8 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC11.15□□□□□ -0.63
VPS13CQ709C8 PMM2-216ENST00000569958 698 ntTSL 2 BASIC11.15□□□□□ -0.63
VPS13CQ709C8 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC11.15□□□□□ -0.63
VPS13CQ709C8 AC136475.9-201ENST00000605240 497 ntBASIC11.15□□□□□ -0.63
VPS13CQ709C8 DUX4L33-201ENST00000635217 958 ntBASIC11.15□□□□□ -0.63
VPS13CQ709C8 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
VPS13CQ709C8 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 ATF4P4-201ENST00000393544 1930 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 AL928921.2-201ENST00000641325 2442 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 GMPS-201ENST00000295920 2024 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC090643.2-201ENST00000623442 2029 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AP000487.2-201ENST00000324630 394 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 RPSAP61-201ENST00000412542 878 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC253536.1-201ENST00000437021 315 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 ATP5G1P7-201ENST00000444398 400 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 RN7SL111P-201ENST00000468841 285 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC090825.2-201ENST00000557959 739 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms