Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.64□□□□□ -0.07
HDAC4P56524 AC025183.3-201ENST00000623526 1482 ntBASIC14.64□□□□□ -0.07
HDAC4P56524 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.64□□□□□ -0.07
HDAC4P56524 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.64□□□□□ -0.07
HDAC4P56524 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 RN7SL258P-201ENST00000478664 300 ntBASIC14.64□□□□□ -0.07
HDAC4P56524 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.64□□□□□ -0.07
HDAC4P56524 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.64□□□□□ -0.07
HDAC4P56524 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 RN7SL574P-201ENST00000581512 297 ntBASIC14.64□□□□□ -0.07
HDAC4P56524 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 AC020922.3-201ENST00000595064 547 ntBASIC14.64□□□□□ -0.07
HDAC4P56524 AL133467.4-201ENST00000602953 725 ntBASIC14.64□□□□□ -0.07
HDAC4P56524 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC14.64□□□□□ -0.07
HDAC4P56524 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 PPT1-213ENST00000641319 2388 ntBASIC14.64□□□□□ -0.07
HDAC4P56524 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14.64□□□□□ -0.07
HDAC4P56524 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
HDAC4P56524 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HDAC4P56524 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HDAC4P56524 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.63□□□□□ -0.07
HDAC4P56524 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HDAC4P56524 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.63□□□□□ -0.07
HDAC4P56524 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC14.63□□□□□ -0.07
HDAC4P56524 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 OR2K2-202ENST00000374428 1038 ntBASIC14.63□□□□□ -0.07
HDAC4P56524 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HDAC4P56524 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC14.63□□□□□ -0.07
HDAC4P56524 AC026320.2-201ENST00000434379 478 ntBASIC14.63□□□□□ -0.07
HDAC4P56524 NUP210P1-202ENST00000504322 710 ntBASIC14.63□□□□□ -0.07
HDAC4P56524 AC114947.1-202ENST00000514136 344 ntBASIC14.63□□□□□ -0.07
HDAC4P56524 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 AC242376.1-201ENST00000559033 726 ntBASIC14.63□□□□□ -0.07
HDAC4P56524 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.63□□□□□ -0.07
HDAC4P56524 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.63□□□□□ -0.07
HDAC4P56524 AL139099.5-201ENST00000635274 300 ntBASIC14.63□□□□□ -0.07
HDAC4P56524 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HDAC4P56524 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HDAC4P56524 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HDAC4P56524 KRT18P9-201ENST00000604826 1300 ntBASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms