Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC12.98□□□□□ -0.33
COL5A1P20908 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
COL5A1P20908 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC12.98□□□□□ -0.33
COL5A1P20908 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 PMF1-201ENST00000368273 884 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
COL5A1P20908 HNRNPA1P3-201ENST00000440968 551 ntBASIC12.98□□□□□ -0.33
COL5A1P20908 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC12.98□□□□□ -0.33
COL5A1P20908 DUX4L31-201ENST00000446466 1136 ntBASIC12.98□□□□□ -0.33
COL5A1P20908 UGT1A12P-201ENST00000447084 853 ntBASIC12.98□□□□□ -0.33
COL5A1P20908 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
COL5A1P20908 ATF4P4-201ENST00000393544 1930 ntBASIC12.98□□□□□ -0.33
COL5A1P20908 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
COL5A1P20908 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
COL5A1P20908 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC12.98□□□□□ -0.33
COL5A1P20908 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL5A1P20908 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.98□□□□□ -0.33
COL5A1P20908 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC12.98□□□□□ -0.33
COL5A1P20908 AC139749.1-202ENST00000617529 3139 ntBASIC12.98□□□□□ -0.33
COL5A1P20908 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC12.97□□□□□ -0.33
COL5A1P20908 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL5A1P20908 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC12.97□□□□□ -0.33
COL5A1P20908 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC12.97□□□□□ -0.33
COL5A1P20908 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 AC090820.1-201ENST00000519722 591 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 PIGCP1-201ENST00000527583 895 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC12.97□□□□□ -0.33
COL5A1P20908 AP001102.1-201ENST00000528959 409 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC12.97□□□□□ -0.33
COL5A1P20908 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC12.97□□□□□ -0.33
COL5A1P20908 PCTP-206ENST00000573500 919 ntTSL 3 BASIC12.97□□□□□ -0.33
COL5A1P20908 RN7SL478P-201ENST00000584358 298 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 AL450487.2-201ENST00000615934 407 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 AC020763.3-201ENST00000625095 2904 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL5A1P20908 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 AL591499.1-201ENST00000307155 1153 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC12.97□□□□□ -0.33
COL5A1P20908 AK2-208ENST00000487289 920 ntTSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC12.97□□□□□ -0.33
COL5A1P20908 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC12.97□□□□□ -0.33
COL5A1P20908 Z82244.1-201ENST00000631502 840 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 AL590556.2-202ENST00000636906 844 ntBASIC12.97□□□□□ -0.33
COL5A1P20908 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms