Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 AL645937.6-201ENST00000641122 3727 ntBASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 PARP8-206ENST00000503665 572 ntTSL 4 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 AC022217.1-201ENST00000521069 738 ntBASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 MIR4783-201ENST00000580343 82 ntBASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 MIR4538-201ENST00000581377 78 ntBASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 PCDHA5-203ENST00000614258 4248 ntBASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 AC002350.2-201ENST00000623894 1828 ntBASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
AMBRA1Q9C0C7 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AC103592.1-201ENST00000394513 664 ntBASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 KLF2P1-201ENST00000447438 1042 ntBASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AC009955.4-201ENST00000597192 544 ntBASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 AC025183.3-201ENST00000623526 1482 ntBASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
AMBRA1Q9C0C7 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
AMBRA1Q9C0C7 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC13.15□□□□□ -0.31
AMBRA1Q9C0C7 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.15□□□□□ -0.31
AMBRA1Q9C0C7 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 AL590824.1-201ENST00000403828 1349 ntBASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.14□□□□□ -0.31
AMBRA1Q9C0C7 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms