Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.24□□□□□ -0.29
RAE1P78406 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RAE1P78406 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
RAE1P78406 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.24□□□□□ -0.29
RAE1P78406 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.24□□□□□ -0.29
RAE1P78406 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 AC007279.1-201ENST00000448547 837 ntBASIC13.24□□□□□ -0.29
RAE1P78406 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 PFN2-206ENST00000461930 606 ntTSL 4 BASIC13.24□□□□□ -0.29
RAE1P78406 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.24□□□□□ -0.29
RAE1P78406 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.24□□□□□ -0.29
RAE1P78406 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC13.24□□□□□ -0.29
RAE1P78406 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.24□□□□□ -0.29
RAE1P78406 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.24□□□□□ -0.29
RAE1P78406 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
RAE1P78406 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.24□□□□□ -0.29
RAE1P78406 AL109837.1-201ENST00000603272 613 ntBASIC13.24□□□□□ -0.29
RAE1P78406 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC13.24□□□□□ -0.29
RAE1P78406 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
RAE1P78406 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.24□□□□□ -0.29
RAE1P78406 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RAE1P78406 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RAE1P78406 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.24□□□□□ -0.29
RAE1P78406 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RAE1P78406 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC13.24□□□□□ -0.29
RAE1P78406 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RAE1P78406 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 AL133338.1-201ENST00000565695 1517 ntBASIC13.23□□□□□ -0.29
RAE1P78406 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
RAE1P78406 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.23□□□□□ -0.29
RAE1P78406 KRT8P31-201ENST00000504812 1408 ntBASIC13.23□□□□□ -0.29
RAE1P78406 AC138761.6-201ENST00000583997 1423 ntBASIC13.23□□□□□ -0.29
RAE1P78406 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 AC002350.2-201ENST00000623894 1828 ntBASIC13.23□□□□□ -0.29
RAE1P78406 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 AP003969.2-201ENST00000623739 2275 ntBASIC13.23□□□□□ -0.29
RAE1P78406 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.23□□□□□ -0.29
RAE1P78406 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
RAE1P78406 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 ELK2AP-201ENST00000392510 1007 ntBASIC13.23□□□□□ -0.29
RAE1P78406 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.23□□□□□ -0.29
RAE1P78406 SPTLC1P5-201ENST00000450718 252 ntBASIC13.23□□□□□ -0.29
RAE1P78406 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.23□□□□□ -0.29
RAE1P78406 HIST2H2BC-201ENST00000498492 580 ntBASIC13.23□□□□□ -0.29
RAE1P78406 AC095040.1-201ENST00000513286 675 ntBASIC13.23□□□□□ -0.29
RAE1P78406 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.23□□□□□ -0.29
RAE1P78406 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.23□□□□□ -0.29
RAE1P78406 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.23□□□□□ -0.29
RAE1P78406 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RAE1P78406 MIR3940-201ENST00000579148 102 ntBASIC13.23□□□□□ -0.29
RAE1P78406 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms