Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC16.46■□□□□ 0.22
MRE11P49959 AOC4P-203ENST00000566825 2289 ntBASIC16.45■□□□□ 0.22
MRE11P49959 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
MRE11P49959 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.45■□□□□ 0.22
MRE11P49959 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.45■□□□□ 0.22
MRE11P49959 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MRE11P49959 RN7SL818P-201ENST00000485099 259 ntBASIC16.45■□□□□ 0.22
MRE11P49959 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.45■□□□□ 0.22
MRE11P49959 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.45■□□□□ 0.22
MRE11P49959 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MRE11P49959 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.45■□□□□ 0.22
MRE11P49959 RN7SL560P-201ENST00000577943 264 ntBASIC16.45■□□□□ 0.22
MRE11P49959 RN7SL725P-201ENST00000606439 259 ntBASIC16.45■□□□□ 0.22
MRE11P49959 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.45■□□□□ 0.22
MRE11P49959 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MRE11P49959 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
MRE11P49959 BSCL2-206ENST00000405837 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MRE11P49959 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MRE11P49959 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 ALDH1L1-205ENST00000452905 2758 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MRE11P49959 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
MRE11P49959 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.44■□□□□ 0.22
MRE11P49959 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 USO1-201ENST00000264904 4135 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 DUSP14-205ENST00000614411 2207 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.44■□□□□ 0.22
MRE11P49959 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 RPL7P3-201ENST00000441388 714 ntBASIC16.44■□□□□ 0.22
MRE11P49959 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.44■□□□□ 0.22
MRE11P49959 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
MRE11P49959 AL079307.3-201ENST00000556114 283 ntBASIC16.44■□□□□ 0.22
MRE11P49959 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 AL022328.1-201ENST00000610050 478 ntBASIC16.44■□□□□ 0.22
MRE11P49959 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 AC009542.2-202ENST00000619004 1067 ntBASIC16.44■□□□□ 0.22
MRE11P49959 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
MRE11P49959 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
MRE11P49959 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
MRE11P49959 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 OS9-203ENST00000389142 2457 ntTSL 5 BASIC16.44■□□□□ 0.22
MRE11P49959 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 ZNF473-203ENST00000445728 2833 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 WDR92-201ENST00000295121 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC16.44■□□□□ 0.22
MRE11P49959 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
MRE11P49959 TGM7-201ENST00000452443 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MRE11P49959 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC16.43■□□□□ 0.22
MRE11P49959 MARCH10-201ENST00000311269 3090 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
MRE11P49959 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MRE11P49959 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
MRE11P49959 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC16.43■□□□□ 0.22
MRE11P49959 SHC1P1-201ENST00000425230 1745 ntBASIC16.43■□□□□ 0.22
MRE11P49959 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
MRE11P49959 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MRE11P49959 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms