Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLK1P49759 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLK1P49759 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC13.3□□□□□ -0.28
CLK1P49759 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.3□□□□□ -0.28
CLK1P49759 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CLK1P49759 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CLK1P49759 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLK1P49759 SHC1P1-201ENST00000425230 1745 ntBASIC13.3□□□□□ -0.28
CLK1P49759 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLK1P49759 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CLK1P49759 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.3□□□□□ -0.28
CLK1P49759 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.3□□□□□ -0.28
CLK1P49759 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.3□□□□□ -0.28
CLK1P49759 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CLK1P49759 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CLK1P49759 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CLK1P49759 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.29□□□□□ -0.28
CLK1P49759 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 FAM58BP-201ENST00000439056 645 ntBASIC13.29□□□□□ -0.28
CLK1P49759 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.29□□□□□ -0.28
CLK1P49759 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.29□□□□□ -0.28
CLK1P49759 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.29□□□□□ -0.28
CLK1P49759 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 SNX29P1-201ENST00000548357 1007 ntBASIC13.29□□□□□ -0.28
CLK1P49759 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.29□□□□□ -0.28
CLK1P49759 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC13.29□□□□□ -0.28
CLK1P49759 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 RIMS1-201ENST00000264839 7055 ntTSL 5 BASIC13.29□□□□□ -0.28
CLK1P49759 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CLK1P49759 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.28□□□□□ -0.28
CLK1P49759 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC13.28□□□□□ -0.28
CLK1P49759 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
CLK1P49759 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
CLK1P49759 AC099336.1-201ENST00000417053 1171 ntBASIC13.28□□□□□ -0.28
CLK1P49759 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms