Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
SOX3P41225 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 RN7SL769P-201ENST00000469386 295 ntBASIC13.26□□□□□ -0.29
SOX3P41225 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.26□□□□□ -0.29
SOX3P41225 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.26□□□□□ -0.29
SOX3P41225 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.26□□□□□ -0.29
SOX3P41225 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 OS9-218ENST00000551035 2246 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 RHOQP1-201ENST00000555758 579 ntBASIC13.26□□□□□ -0.29
SOX3P41225 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 AC140658.4-201ENST00000561990 352 ntBASIC13.26□□□□□ -0.29
SOX3P41225 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 AC106872.11-201ENST00000605838 421 ntBASIC13.26□□□□□ -0.29
SOX3P41225 AC104506.1-201ENST00000609247 429 ntBASIC13.26□□□□□ -0.29
SOX3P41225 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX3P41225 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SOX3P41225 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SOX3P41225 BEND3P3-201ENST00000611030 2440 ntBASIC13.25□□□□□ -0.29
SOX3P41225 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
SOX3P41225 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 AC118758.2-201ENST00000614242 2813 ntBASIC13.25□□□□□ -0.29
SOX3P41225 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 ELK2AP-201ENST00000392510 1007 ntBASIC13.25□□□□□ -0.29
SOX3P41225 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.25□□□□□ -0.29
SOX3P41225 RN7SL277P-201ENST00000481521 288 ntBASIC13.25□□□□□ -0.29
SOX3P41225 AC134698.3-201ENST00000523880 214 ntBASIC13.25□□□□□ -0.29
SOX3P41225 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 AC242376.1-201ENST00000559033 726 ntBASIC13.25□□□□□ -0.29
SOX3P41225 MIR4754-201ENST00000582477 89 ntBASIC13.25□□□□□ -0.29
SOX3P41225 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 AL109837.1-201ENST00000603272 613 ntBASIC13.25□□□□□ -0.29
SOX3P41225 AC012044.1-201ENST00000603431 297 ntBASIC13.25□□□□□ -0.29
SOX3P41225 AL022334.2-201ENST00000610000 484 ntBASIC13.25□□□□□ -0.29
SOX3P41225 MIR6769A-201ENST00000617340 73 ntBASIC13.25□□□□□ -0.29
SOX3P41225 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC13.25□□□□□ -0.29
SOX3P41225 AL122018.1-201ENST00000446607 2310 ntBASIC13.25□□□□□ -0.29
SOX3P41225 PEG13-201ENST00000631594 5667 ntBASIC13.25□□□□□ -0.29
SOX3P41225 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 PCDHB18P-202ENST00000526308 3197 ntBASIC13.25□□□□□ -0.29
SOX3P41225 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
SOX3P41225 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX3P41225 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
SOX3P41225 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.25□□□□□ -0.29
SOX3P41225 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX3P41225 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
SOX3P41225 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX3P41225 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX3P41225 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX3P41225 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms