Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL031432.5-201ENST00000641059 760 ntBASIC8.62□□□□□ -1.03
LINC00643Q86TS7 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 IMPDH1P8-201ENST00000413639 1525 ntBASIC8.62□□□□□ -1.03
LINC00643Q86TS7 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 PKD2L1-201ENST00000318222 3043 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CTCFL-202ENST00000371196 3491 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 SLC18A1-205ENST00000440926 2956 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 UNC45B-201ENST00000268876 5679 ntAPPRIS P3 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 PSMD5-201ENST00000210313 3443 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CYB5R3-202ENST00000361740 2938 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 ARHGAP27-202ENST00000376922 3628 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CACNG4-201ENST00000262138 3380 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 MAGED1-202ENST00000375695 2875 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AC007622.2-202ENST00000546714 1680 ntTSL 2 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CPT1A-201ENST00000265641 5232 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 AL132656.4-201ENST00000623504 2122 ntBASIC8.62□□□□□ -1.03
LINC00643Q86TS7 TSPYL2-201ENST00000375442 2815 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 LRRC8E-206ENST00000618098 3743 ntAPPRIS P1 TSL 3 BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 CLSTN3-201ENST00000266546 4185 ntAPPRIS P2 TSL 1 (best) BASIC8.62□□□□□ -1.03
LINC00643Q86TS7 COLQ-201ENST00000383781 2784 ntTSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 CSPG4P10-201ENST00000456932 4817 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 MAP3K9-204ENST00000554146 2982 ntTSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 BEAN1-207ENST00000564819 2929 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ZFR-201ENST00000265069 4738 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 CEP350-202ENST00000367607 13491 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AC008040.5-201ENST00000599781 1781 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 STK16-204ENST00000409638 2868 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 POLR3H-203ENST00000396504 4176 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ZC3HC1-202ENST00000358303 1972 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 PTGFR-202ENST00000370757 4379 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 NLRP7-202ENST00000340844 3250 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 EFHC1-201ENST00000371068 6987 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 FCHSD1-201ENST00000435817 4320 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 CTBP2-201ENST00000309035 3669 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 TPCN1-204ENST00000541517 5173 ntTSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 MARK2P16-201ENST00000605714 1723 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AC111182.1-201ENST00000588701 3419 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 RCN1P2-201ENST00000398357 915 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ELK2BP-201ENST00000415014 1224 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AC102953.1-201ENST00000445345 498 ntTSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 NPIPP1-202ENST00000534799 1214 ntTSL 3 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AC026979.3-201ENST00000607315 403 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 GPR39-203ENST00000622084 900 ntTSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 GAL3ST4-203ENST00000413800 2334 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 GUCD1-213ENST00000621833 3584 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ERVMER34-1-201ENST00000440542 2744 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 CTSK-201ENST00000271651 1692 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ZKSCAN1-205ENST00000535170 8758 ntTSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ACIN1-213ENST00000555053 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 RAD50-201ENST00000378823 8306 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 PDHA1-206ENST00000422285 3310 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 MPP7-202ENST00000375719 2090 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 DMBX1-202ENST00000371956 2882 ntAPPRIS ALT1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 SUOX-203ENST00000394109 2860 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 LAMA3-203ENST00000399516 9834 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 SLC45A4-202ENST00000517878 3470 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 AC009093.10-201ENST00000641956 1442 ntBASIC8.61□□□□□ -1.03
LINC00643Q86TS7 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 MIR22HG-208ENST00000574306 2626 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 RAB43-203ENST00000393305 4215 ntAPPRIS P1 TSL 4 BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 BOC-215ENST00000495514 4646 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 CEP83-203ENST00000397809 3773 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 EIF3D-201ENST00000216190 2155 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 RHCG-201ENST00000268122 1982 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
LINC00643Q86TS7 MMP2-203ENST00000543485 1978 ntTSL 2 BASIC8.61□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms