Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.94□□□□□ -0.34
RFC3P40938 HERC2P11-201ENST00000562845 725 ntBASIC12.94□□□□□ -0.34
RFC3P40938 AC100756.2-201ENST00000569537 736 ntBASIC12.94□□□□□ -0.34
RFC3P40938 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 MIR4750-201ENST00000584564 56 ntBASIC12.94□□□□□ -0.34
RFC3P40938 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.94□□□□□ -0.34
RFC3P40938 USP3-204ENST00000540797 5474 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 LINC01815-202ENST00000641468 1409 ntBASIC12.94□□□□□ -0.34
RFC3P40938 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC12.94□□□□□ -0.34
RFC3P40938 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.93□□□□□ -0.34
RFC3P40938 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 AC006372.4-201ENST00000624122 1543 ntBASIC12.93□□□□□ -0.34
RFC3P40938 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 TEKT4P2-202ENST00000559466 1312 ntBASIC12.93□□□□□ -0.34
RFC3P40938 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 PPT1-213ENST00000641319 2388 ntBASIC12.93□□□□□ -0.34
RFC3P40938 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
RFC3P40938 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC12.93□□□□□ -0.34
RFC3P40938 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
RFC3P40938 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
RFC3P40938 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC12.93□□□□□ -0.34
RFC3P40938 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC12.93□□□□□ -0.34
RFC3P40938 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC12.93□□□□□ -0.34
RFC3P40938 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
RFC3P40938 AC095040.1-201ENST00000513286 675 ntBASIC12.93□□□□□ -0.34
RFC3P40938 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC12.93□□□□□ -0.34
RFC3P40938 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
RFC3P40938 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.93□□□□□ -0.34
RFC3P40938 WT1-AS_6.1-201ENST00000614919 121 ntBASIC12.93□□□□□ -0.34
RFC3P40938 AC025262.2-201ENST00000623975 1056 ntBASIC12.93□□□□□ -0.34
RFC3P40938 AC009145.4-201ENST00000625119 1294 ntBASIC12.93□□□□□ -0.34
RFC3P40938 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
RFC3P40938 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC12.93□□□□□ -0.34
RFC3P40938 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
RFC3P40938 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.93□□□□□ -0.34
RFC3P40938 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
RFC3P40938 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.93□□□□□ -0.34
RFC3P40938 AC092053.3-201ENST00000641308 4975 ntBASIC12.92□□□□□ -0.34
RFC3P40938 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.92□□□□□ -0.34
RFC3P40938 CTBP1-AS2-206ENST00000581398 5652 ntBASIC12.92□□□□□ -0.34
RFC3P40938 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
RFC3P40938 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
RFC3P40938 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
RFC3P40938 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms