Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 AC015967.2-201ENST00000624092 234 ntBASIC13.92□□□□□ -0.18
COL6A2P12110 AC006435.4-201ENST00000625037 234 ntBASIC13.92□□□□□ -0.18
COL6A2P12110 AL356737.1-201ENST00000634391 234 ntBASIC13.92□□□□□ -0.18
COL6A2P12110 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL6A2P12110 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 AC005014.1-201ENST00000432006 2976 ntBASIC13.92□□□□□ -0.18
COL6A2P12110 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL6A2P12110 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL6A2P12110 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
COL6A2P12110 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A2P12110 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A2P12110 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL6A2P12110 RPL18P13-201ENST00000478088 569 ntBASIC13.91□□□□□ -0.18
COL6A2P12110 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.91□□□□□ -0.18
COL6A2P12110 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A2P12110 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 CECR7-204ENST00000609932 568 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A2P12110 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 KRT8P29-201ENST00000420409 1371 ntBASIC13.91□□□□□ -0.18
COL6A2P12110 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL6A2P12110 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL6A2P12110 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A2P12110 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL6A2P12110 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A2P12110 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
COL6A2P12110 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A2P12110 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A2P12110 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.9□□□□□ -0.18
COL6A2P12110 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A2P12110 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A2P12110 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A2P12110 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
COL6A2P12110 AC234783.1-201ENST00000441761 496 ntBASIC13.9□□□□□ -0.18
COL6A2P12110 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms