Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ACTG1P11-201ENST00000425411 1125 ntBASIC16.55■□□□□ 0.24
HMGB1P09429 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 SPTLC1P5-201ENST00000450718 252 ntBASIC16.55■□□□□ 0.24
HMGB1P09429 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.55■□□□□ 0.24
HMGB1P09429 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HMGB1P09429 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HMGB1P09429 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 CICP17-201ENST00000418553 2377 ntBASIC16.55■□□□□ 0.24
HMGB1P09429 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 AL031432.4-201ENST00000641729 2190 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 ZNF493-208ENST00000599461 1769 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
HMGB1P09429 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 AC007279.1-201ENST00000448547 837 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 AC008723.1-201ENST00000506922 207 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC16.54■□□□□ 0.24
HMGB1P09429 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
HMGB1P09429 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB1P09429 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB1P09429 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.54■□□□□ 0.24
HMGB1P09429 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
HMGB1P09429 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HMGB1P09429 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 TBC1D27-202ENST00000424239 1573 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 DMBT1P1-203ENST00000636837 4628 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HMGB1P09429 AC131212.3-201ENST00000624087 4219 ntBASIC16.54■□□□□ 0.24
HMGB1P09429 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HMGB1P09429 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.54■□□□□ 0.24
HMGB1P09429 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HMGB1P09429 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HMGB1P09429 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 MSNP1-201ENST00000511640 1732 ntBASIC16.53■□□□□ 0.24
HMGB1P09429 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC16.53■□□□□ 0.24
HMGB1P09429 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HMGB1P09429 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
HMGB1P09429 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HMGB1P09429 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB1P09429 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.53■□□□□ 0.24
HMGB1P09429 AL353637.1-201ENST00000451571 732 ntBASIC16.53■□□□□ 0.24
HMGB1P09429 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms