Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 FADS2-212ENST00000522639 360 ntTSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 FADS2-215ENST00000574708 385 ntTSL 3 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AC104982.3-201ENST00000581995 514 ntBASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AC005695.3-201ENST00000614522 232 ntBASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AC022748.3-201ENST00000621828 275 ntBASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 CR392039.2-201ENST00000623182 509 ntBASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 DGCR9-201ENST00000609630 2415 ntBASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LINC00346Q8IVM7 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 CICP20-201ENST00000443330 2801 ntBASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 AC004241.5-201ENST00000623870 2448 ntBASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 AC004623.1-201ENST00000624592 2127 ntBASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 AL391647.1-201ENST00000395664 511 ntBASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LINC00346Q8IVM7 POM121L10P-201ENST00000436994 1285 ntBASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms