Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AC079325.1-201ENST00000430386 857 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 DUX4L31-201ENST00000446466 1136 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 ALDOAP1-201ENST00000491506 1078 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 DERL2-206ENST00000572834 589 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 NAT9-219ENST00000582524 573 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AP006248.1-201ENST00000610471 67 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AC011477.7-201ENST00000617163 1440 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC88AQ3V6T2 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC16.71■□□□□ 0.26
CCDC88AQ3V6T2 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CCDC88AQ3V6T2 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
CCDC88AQ3V6T2 SFPQP1-201ENST00000446621 1786 ntBASIC16.71■□□□□ 0.26
CCDC88AQ3V6T2 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 CA5BP1-205ENST00000435806 1064 ntBASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 MIR4326-201ENST00000582203 59 ntBASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CCDC88AQ3V6T2 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AL591499.1-201ENST00000307155 1153 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 CCL19-202ENST00000378800 414 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 SNORA50C-201ENST00000408535 133 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AC092865.2-201ENST00000439409 971 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 HLA-W-207ENST00000439514 771 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 KRT18P8-201ENST00000581937 1246 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AL078624.1-201ENST00000604004 547 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 SNORA50.1-201ENST00000628590 135 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 COG6-212ENST00000630730 186 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AC089987.1-201ENST00000551654 2209 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 MST1P2-201ENST00000457982 2291 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AC024075.2-201ENST00000598112 1473 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AL450346.2-201ENST00000495602 1024 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 METTL7AP1-201ENST00000547343 496 ntBASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC16.69■□□□□ 0.26
CCDC88AQ3V6T2 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms