Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.86□□□□□ -0.03
BRCC3P46736 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 AL365181.3-201ENST00000605886 3222 ntBASIC14.86□□□□□ -0.03
BRCC3P46736 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
BRCC3P46736 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.86□□□□□ -0.03
BRCC3P46736 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC14.86□□□□□ -0.03
BRCC3P46736 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC14.86□□□□□ -0.03
BRCC3P46736 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
BRCC3P46736 AC013553.1-201ENST00000560906 267 ntBASIC14.86□□□□□ -0.03
BRCC3P46736 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC14.86□□□□□ -0.03
BRCC3P46736 RN7SL556P-201ENST00000582856 298 ntBASIC14.86□□□□□ -0.03
BRCC3P46736 AC010976.2-201ENST00000609697 852 ntBASIC14.86□□□□□ -0.03
BRCC3P46736 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BRCC3P46736 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.85□□□□□ -0.03
BRCC3P46736 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 FMO6P-201ENST00000236166 1620 ntBASIC14.85□□□□□ -0.03
BRCC3P46736 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
BRCC3P46736 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.85□□□□□ -0.03
BRCC3P46736 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 AC073210.1-201ENST00000414799 232 ntBASIC14.85□□□□□ -0.03
BRCC3P46736 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC14.85□□□□□ -0.03
BRCC3P46736 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.85□□□□□ -0.03
BRCC3P46736 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC14.85□□□□□ -0.03
BRCC3P46736 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.85□□□□□ -0.03
BRCC3P46736 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC14.85□□□□□ -0.03
BRCC3P46736 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.85□□□□□ -0.03
BRCC3P46736 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.85□□□□□ -0.03
BRCC3P46736 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.85□□□□□ -0.03
BRCC3P46736 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
BRCC3P46736 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BRCC3P46736 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BRCC3P46736 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC14.84□□□□□ -0.03
BRCC3P46736 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.84□□□□□ -0.03
BRCC3P46736 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.84□□□□□ -0.03
BRCC3P46736 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
BRCC3P46736 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
BRCC3P46736 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BRCC3P46736 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.84□□□□□ -0.03
BRCC3P46736 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC14.84□□□□□ -0.03
BRCC3P46736 KRT18P62-201ENST00000446618 1287 ntBASIC14.84□□□□□ -0.03
BRCC3P46736 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC14.84□□□□□ -0.03
BRCC3P46736 AL157792.1-201ENST00000488281 530 ntBASIC14.84□□□□□ -0.03
BRCC3P46736 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.84□□□□□ -0.03
BRCC3P46736 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.84□□□□□ -0.03
BRCC3P46736 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.84□□□□□ -0.03
BRCC3P46736 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.84□□□□□ -0.03
BRCC3P46736 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.84□□□□□ -0.03
BRCC3P46736 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
BRCC3P46736 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
BRCC3P46736 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms