Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 CHMP4BP1-201ENST00000556017 588 ntBASIC13.91□□□□□ -0.18
CDH3P22223 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.91□□□□□ -0.18
CDH3P22223 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
CDH3P22223 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 AC106872.11-201ENST00000605838 421 ntBASIC13.91□□□□□ -0.18
CDH3P22223 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CDH3P22223 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CDH3P22223 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDH3P22223 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
CDH3P22223 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CDH3P22223 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC13.9□□□□□ -0.18
CDH3P22223 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
CDH3P22223 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CDH3P22223 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CDH3P22223 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13.9□□□□□ -0.18
CDH3P22223 PDIA3P2-201ENST00000428073 158 ntBASIC13.9□□□□□ -0.18
CDH3P22223 RN7SL769P-201ENST00000469386 295 ntBASIC13.9□□□□□ -0.18
CDH3P22223 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.9□□□□□ -0.18
CDH3P22223 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.9□□□□□ -0.18
CDH3P22223 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 RTN3P1-201ENST00000536295 711 ntBASIC13.9□□□□□ -0.18
CDH3P22223 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.9□□□□□ -0.18
CDH3P22223 RHOQP1-201ENST00000555758 579 ntBASIC13.9□□□□□ -0.18
CDH3P22223 AC140658.4-201ENST00000561990 352 ntBASIC13.9□□□□□ -0.18
CDH3P22223 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.9□□□□□ -0.18
CDH3P22223 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
CDH3P22223 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.9□□□□□ -0.18
CDH3P22223 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
CDH3P22223 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.9□□□□□ -0.18
CDH3P22223 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CDH3P22223 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDH3P22223 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.9□□□□□ -0.19
CDH3P22223 LINC01165-201ENST00000445190 1623 ntBASIC13.9□□□□□ -0.19
CDH3P22223 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CDH3P22223 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.19
CDH3P22223 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC13.89□□□□□ -0.19
CDH3P22223 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.89□□□□□ -0.19
CDH3P22223 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.89□□□□□ -0.19
CDH3P22223 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.89□□□□□ -0.19
CDH3P22223 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CDH3P22223 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC13.89□□□□□ -0.19
CDH3P22223 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC13.89□□□□□ -0.19
CDH3P22223 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC13.89□□□□□ -0.19
CDH3P22223 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.89□□□□□ -0.19
CDH3P22223 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CDH3P22223 RNA5SP359-201ENST00000364838 113 ntBASIC13.89□□□□□ -0.19
CDH3P22223 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 ELK2AP-201ENST00000392510 1007 ntBASIC13.89□□□□□ -0.19
CDH3P22223 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.89□□□□□ -0.19
CDH3P22223 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CDH3P22223 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 AC105129.2-201ENST00000559536 390 ntBASIC13.89□□□□□ -0.19
CDH3P22223 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDH3P22223 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.89□□□□□ -0.19
CDH3P22223 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms