Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL6A2P12110 AL023803.2-201ENST00000620080 638 ntBASIC13.94□□□□□ -0.18
COL6A2P12110 AC092299.1-201ENST00000632679 757 ntBASIC13.94□□□□□ -0.18
COL6A2P12110 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.93□□□□□ -0.18
COL6A2P12110 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A2P12110 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 VDAC1P1-201ENST00000439229 848 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 EIF4HP1-201ENST00000453115 687 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 CR383656.12-201ENST00000549567 513 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 AC008805.1-201ENST00000590892 364 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.93□□□□□ -0.18
COL6A2P12110 AL161773.1-201ENST00000624845 863 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 AL139424.3-202ENST00000641619 917 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 AC105233.6-201ENST00000642093 218 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.93□□□□□ -0.18
COL6A2P12110 AC093462.1-201ENST00000621167 1683 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 AP000437.1-201ENST00000624057 2085 ntBASIC13.93□□□□□ -0.18
COL6A2P12110 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A2P12110 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
COL6A2P12110 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 FTO-214ENST00000636218 2227 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.92□□□□□ -0.18
COL6A2P12110 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.92□□□□□ -0.18
COL6A2P12110 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL6A2P12110 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL6A2P12110 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.92□□□□□ -0.18
COL6A2P12110 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.92□□□□□ -0.18
COL6A2P12110 HLA-J-204ENST00000495278 958 ntBASIC13.92□□□□□ -0.18
COL6A2P12110 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms