Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 CAP2P1-201ENST00000557743 1390 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 AL627231.1-201ENST00000394467 1125 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 BX679664.3-201ENST00000414070 555 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 AL807761.2-201ENST00000422849 729 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 AL592076.1-201ENST00000424448 303 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 RPL8P2-201ENST00000430538 502 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 AC113935.1-201ENST00000471722 555 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 RHOQP1-201ENST00000555758 579 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 AC007326.1-201ENST00000604539 458 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 BAP1-211ENST00000615113 489 ntBASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.02□□□□□ -0.17
TRIM39Q9HCM9 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AC005740.1-201ENST00000515639 522 ntBASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 NDUFB10P1-201ENST00000567319 521 ntBASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AC067931.2-201ENST00000623655 2003 ntBASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TRIM39Q9HCM9 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14□□□□□ -0.17
TRIM39Q9HCM9 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
TRIM39Q9HCM9 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 404.7 ms