Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC12.65□□□□□ -0.38
VBP1P61758 PPP1R12B-214ENST00000491336 2046 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.65□□□□□ -0.38
VBP1P61758 AL356966.1-201ENST00000454752 2367 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC12.65□□□□□ -0.38
VBP1P61758 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC12.65□□□□□ -0.38
VBP1P61758 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
VBP1P61758 RCC2P1-201ENST00000452257 1476 ntBASIC12.65□□□□□ -0.38
VBP1P61758 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC12.65□□□□□ -0.38
VBP1P61758 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC12.65□□□□□ -0.39
VBP1P61758 MAP7-208ENST00000617204 4536 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.39
VBP1P61758 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
VBP1P61758 CTAGE13P-201ENST00000416709 2446 ntBASIC12.64□□□□□ -0.39
VBP1P61758 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
VBP1P61758 MANEA-AS1-201ENST00000564541 2268 ntBASIC12.64□□□□□ -0.39
VBP1P61758 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 AC099521.2-201ENST00000619354 2036 ntBASIC12.64□□□□□ -0.39
VBP1P61758 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC12.64□□□□□ -0.39
VBP1P61758 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 STRA6-206ENST00000449139 2732 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
VBP1P61758 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 ZNF493-208ENST00000599461 1769 ntBASIC12.64□□□□□ -0.39
VBP1P61758 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
VBP1P61758 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
VBP1P61758 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 SNORA50C-201ENST00000408535 133 ntBASIC12.64□□□□□ -0.39
VBP1P61758 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 FAAHP1-202ENST00000446499 1238 ntBASIC12.64□□□□□ -0.39
VBP1P61758 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 HLA-V-204ENST00000476601 1289 ntBASIC12.64□□□□□ -0.39
VBP1P61758 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC12.64□□□□□ -0.39
VBP1P61758 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.64□□□□□ -0.39
VBP1P61758 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.64□□□□□ -0.39
VBP1P61758 AC027601.4-201ENST00000611259 610 ntBASIC12.64□□□□□ -0.39
VBP1P61758 AL662799.1-202ENST00000614205 422 ntBASIC12.64□□□□□ -0.39
VBP1P61758 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.64□□□□□ -0.39
VBP1P61758 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
VBP1P61758 SNORA50.1-201ENST00000628590 135 ntBASIC12.64□□□□□ -0.39
VBP1P61758 KCNC2-201ENST00000298972 3563 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
VBP1P61758 AC138150.2-201ENST00000589796 2053 ntTSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC12.64□□□□□ -0.39
VBP1P61758 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 ZNF259P1-201ENST00000407656 1365 ntBASIC12.64□□□□□ -0.39
VBP1P61758 PAM-204ENST00000348126 3622 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 PRTFDC1-201ENST00000320152 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
VBP1P61758 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC12.64□□□□□ -0.39
VBP1P61758 HSPB7-201ENST00000311890 2892 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
VBP1P61758 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 GLIPR2-202ENST00000377960 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC12.63□□□□□ -0.39
VBP1P61758 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
VBP1P61758 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 SPCS2-209ENST00000610881 2711 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
VBP1P61758 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC12.63□□□□□ -0.39
VBP1P61758 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 KIAA1324-210ENST00000529753 2903 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.63□□□□□ -0.39
VBP1P61758 UBTF-206ENST00000527034 3010 ntTSL 5 BASIC12.63□□□□□ -0.39
VBP1P61758 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
VBP1P61758 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC12.63□□□□□ -0.39
VBP1P61758 GUCY2EP-203ENST00000531117 1918 ntBASIC12.63□□□□□ -0.39
VBP1P61758 CD82-202ENST00000342935 967 ntTSL 5 BASIC12.63□□□□□ -0.39
VBP1P61758 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
VBP1P61758 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.63□□□□□ -0.39
VBP1P61758 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.63□□□□□ -0.39
VBP1P61758 MCCD1P2-201ENST00000423228 335 ntBASIC12.63□□□□□ -0.39
VBP1P61758 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.63□□□□□ -0.39
VBP1P61758 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms