Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 RAP1GAP2-201ENST00000254695 6661 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
AP3S2P59780 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
AP3S2P59780 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
AP3S2P59780 INTS4P2-202ENST00000614726 2019 ntBASIC12.13□□□□□ -0.47
AP3S2P59780 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
AP3S2P59780 CHL1-201ENST00000256509 8023 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
AP3S2P59780 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC12.13□□□□□ -0.47
AP3S2P59780 ZNF493-208ENST00000599461 1769 ntBASIC12.13□□□□□ -0.47
AP3S2P59780 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC12.13□□□□□ -0.47
AP3S2P59780 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
AP3S2P59780 KCNA1-201ENST00000382545 7997 ntAPPRIS P1 TSL 4 BASIC12.12□□□□□ -0.47
AP3S2P59780 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 PEX5L-208ENST00000467460 9082 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 AC020910.5-201ENST00000623668 1865 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 ZFC3H1-201ENST00000378743 7285 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 BSCL2-206ENST00000405837 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 KLF8-202ENST00000374928 4821 ntTSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 ZNF302-203ENST00000457781 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 MARK2P16-201ENST00000605714 1723 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 PPIL2-201ENST00000335025 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
AP3S2P59780 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12.12□□□□□ -0.47
AP3S2P59780 AC134915.1-201ENST00000426461 574 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 RN7SL399P-201ENST00000471648 279 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 ALG1L5P-201ENST00000482043 771 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 IGHVIII-5-2-201ENST00000522505 261 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.12□□□□□ -0.47
AP3S2P59780 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC12.12□□□□□ -0.47
AP3S2P59780 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 PAM16-211ENST00000575848 518 ntTSL 3 BASIC12.12□□□□□ -0.47
AP3S2P59780 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
AP3S2P59780 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 PPP1R26P2-201ENST00000611403 3595 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 HNRNPMP1-201ENST00000560685 1768 ntBASIC12.12□□□□□ -0.47
AP3S2P59780 C19orf12-208ENST00000614091 4489 ntAPPRIS P1 TSL 4 BASIC12.12□□□□□ -0.47
AP3S2P59780 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC12.12□□□□□ -0.47
AP3S2P59780 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
AP3S2P59780 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
AP3S2P59780 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC12.11□□□□□ -0.47
AP3S2P59780 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC12.11□□□□□ -0.47
AP3S2P59780 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 NPAP1-201ENST00000329468 7526 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
AP3S2P59780 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.11□□□□□ -0.47
AP3S2P59780 FTO-214ENST00000636218 2227 ntTSL 5 BASIC12.11□□□□□ -0.47
AP3S2P59780 PDE5A-202ENST00000354960 7154 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC12.11□□□□□ -0.47
AP3S2P59780 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 TXNRD1-202ENST00000388854 4277 ntTSL 5 BASIC12.11□□□□□ -0.47
AP3S2P59780 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 UGGT2-203ENST00000376747 4832 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
AP3S2P59780 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
AP3S2P59780 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms