Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
CIITAP33076 LINC00244-201ENST00000625073 613 ntBASIC15.75■□□□□ 0.11
CIITAP33076 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC15.75■□□□□ 0.11
CIITAP33076 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.75■□□□□ 0.11
CIITAP33076 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CIITAP33076 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
CIITAP33076 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 AC089987.1-201ENST00000551654 2209 ntBASIC15.75■□□□□ 0.11
CIITAP33076 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CIITAP33076 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CIITAP33076 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.75■□□□□ 0.11
CIITAP33076 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CIITAP33076 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 AC041040.2-201ENST00000622926 2899 ntBASIC15.74■□□□□ 0.11
CIITAP33076 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CIITAP33076 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC15.74■□□□□ 0.11
CIITAP33076 AC025186.1-201ENST00000478174 870 ntBASIC15.74■□□□□ 0.11
CIITAP33076 AL132994.1-201ENST00000554098 400 ntBASIC15.74■□□□□ 0.11
CIITAP33076 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC15.74■□□□□ 0.11
CIITAP33076 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC15.74■□□□□ 0.11
CIITAP33076 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 SPCS2P2-201ENST00000603270 608 ntBASIC15.74■□□□□ 0.11
CIITAP33076 AC107464.3-201ENST00000609172 737 ntBASIC15.74■□□□□ 0.11
CIITAP33076 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CIITAP33076 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC15.74■□□□□ 0.11
CIITAP33076 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CIITAP33076 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CIITAP33076 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CIITAP33076 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.73■□□□□ 0.11
CIITAP33076 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
CIITAP33076 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms