Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 AC087203.1-201ENST00000532111 1181 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGA1P17096 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGA1P17096 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 HKR1-225ENST00000592168 566 ntTSL 4 BASIC14.39□□□□□ -0.11
HMGA1P17096 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HMGA1P17096 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
HMGA1P17096 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HMGA1P17096 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HMGA1P17096 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 U3.5-201ENST00000363448 216 ntBASIC14.38□□□□□ -0.11
HMGA1P17096 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.38□□□□□ -0.11
HMGA1P17096 MIR1227-201ENST00000408484 88 ntBASIC14.38□□□□□ -0.11
HMGA1P17096 HNRNPA1P2-207ENST00000432375 960 ntBASIC14.38□□□□□ -0.11
HMGA1P17096 AC005077.3-201ENST00000449614 213 ntBASIC14.38□□□□□ -0.11
HMGA1P17096 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 RN7SL351P-201ENST00000469306 248 ntBASIC14.38□□□□□ -0.11
HMGA1P17096 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC14.38□□□□□ -0.11
HMGA1P17096 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC14.38□□□□□ -0.11
HMGA1P17096 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC14.38□□□□□ -0.11
HMGA1P17096 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HMGA1P17096 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.38□□□□□ -0.11
HMGA1P17096 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGA1P17096 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HMGA1P17096 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.37□□□□□ -0.11
HMGA1P17096 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 AC022080.1-201ENST00000366255 781 ntBASIC14.37□□□□□ -0.11
HMGA1P17096 MIR1301-201ENST00000408518 82 ntBASIC14.37□□□□□ -0.11
HMGA1P17096 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms