Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A2P12110 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
COL6A2P12110 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A2P12110 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A2P12110 AC011742.3-201ENST00000439053 820 ntBASIC13.95□□□□□ -0.18
COL6A2P12110 CROCCP4-201ENST00000457096 498 ntBASIC13.95□□□□□ -0.18
COL6A2P12110 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 CHCHD2P2-201ENST00000503744 321 ntBASIC13.95□□□□□ -0.18
COL6A2P12110 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A2P12110 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A2P12110 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A2P12110 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 NOBOX-201ENST00000467773 2076 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 DNM1P41-201ENST00000623634 3350 ntBASIC13.95□□□□□ -0.18
COL6A2P12110 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A2P12110 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 FAM90A7P-201ENST00000382628 1395 ntBASIC13.95□□□□□ -0.18
COL6A2P12110 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 FAM90A23P-201ENST00000400136 1395 ntBASIC13.95□□□□□ -0.18
COL6A2P12110 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A2P12110 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A2P12110 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 Z98885.3-201ENST00000624882 1757 ntBASIC13.94□□□□□ -0.18
COL6A2P12110 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A2P12110 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.94□□□□□ -0.18
COL6A2P12110 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A2P12110 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A2P12110 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 CTBP2P5-201ENST00000454986 1264 ntBASIC13.94□□□□□ -0.18
COL6A2P12110 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A2P12110 AC125807.2-201ENST00000513358 3514 ntBASIC13.94□□□□□ -0.18
COL6A2P12110 SCARNA21-201ENST00000517026 139 ntBASIC13.94□□□□□ -0.18
COL6A2P12110 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A2P12110 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A2P12110 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A2P12110 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A2P12110 DUX4L45-201ENST00000566406 1057 ntBASIC13.94□□□□□ -0.18
COL6A2P12110 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A2P12110 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A2P12110 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms