Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 OR2I1P-208ENST00000641137 4948 ntBASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CCDC3Q9BQI4 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC3Q9BQI4 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
CCDC3Q9BQI4 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC3Q9BQI4 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC3Q9BQI4 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC3Q9BQI4 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC3Q9BQI4 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AL357563.1-201ENST00000404728 395 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC006987.1-201ENST00000413610 527 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 RGS5-216ENST00000449680 788 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 CCT8L1P-201ENST00000465400 1674 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC084752.1-201ENST00000509766 622 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 MIR5196-201ENST00000578146 115 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 RN7SL357P-201ENST00000581065 298 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AL021707.6-201ENST00000609212 491 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC104506.1-201ENST00000609247 429 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC138466.5-201ENST00000624002 808 ntBASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC3Q9BQI4 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 AC005912.2-201ENST00000619492 2400 ntBASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.76□□□□□ -0.21
CCDC3Q9BQI4 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms