Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SPATA13-205ENST00000409126 2111 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 BRD9-204ENST00000483173 2120 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 ARMC8-201ENST00000358441 3181 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 USP39-207ENST00000450066 2086 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 RASGEF1A-203ENST00000395809 4104 ntAPPRIS P3 TSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 RHD-210ENST00000622561 3007 ntTSL 5 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 ITIH1-201ENST00000273283 2911 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 ZNF627-201ENST00000361113 2840 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 UBOX5-201ENST00000217173 4631 ntAPPRIS P4 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 KANSL1-201ENST00000262419 5309 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 LCMT1-AS2-201ENST00000562280 2601 ntTSL 2 BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 SRC-203ENST00000373567 4321 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
LINC00643Q86TS7 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ZNF300-205ENST00000446148 3323 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 DRC1-201ENST00000288710 2491 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AL365181.2-201ENST00000606343 3222 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ABAT-201ENST00000268251 4836 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC093583.1-201ENST00000462083 2383 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 PTCH1-203ENST00000375274 4720 ntTSL 5 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 CPSF6-201ENST00000266679 2229 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 DNAI2-201ENST00000311014 2236 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC061965.1-201ENST00000560524 1465 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ARHGEF4-201ENST00000326016 3666 ntAPPRIS P3 TSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 UBA3-202ENST00000361055 2154 ntAPPRIS P4 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 RANBP20P-201ENST00000557256 2104 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 CSF3R-202ENST00000361632 2847 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 RAB8B-201ENST00000321437 4943 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC026369.1-202ENST00000508953 4913 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 SCNN1A-203ENST00000360168 3481 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC004494.1-201ENST00000613210 2775 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 CCDC33-201ENST00000268082 2093 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 TSC22D3-206ENST00000372397 2027 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 SRP68-212ENST00000602720 2037 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 PYGL-206ENST00000544180 2696 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ENOX2-203ENST00000370935 3963 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC008132.1-203ENST00000412938 5920 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 DDX3P1-201ENST00000418231 1950 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC092902.5-201ENST00000641650 3256 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ZNF423-205ENST00000562871 4514 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC104590.1-202ENST00000558368 1921 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC069152.1-201ENST00000438030 544 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 KRT18P38-201ENST00000449496 1282 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 FXR1-221ENST00000491674 365 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC139887.3-201ENST00000568585 713 ntBASIC8.65□□□□□ -1.02
LINC00643Q86TS7 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 C12orf74-201ENST00000397833 1856 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 PMEL-215ENST00000550464 1867 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 ESPNL-206ENST00000612395 3673 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 DDR1-232ENST00000418800 3588 ntAPPRIS P3 TSL 2 BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 GABBR1-203ENST00000377012 4104 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
LINC00643Q86TS7 TCOF1-211ENST00000513346 4646 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 PLXNA3-201ENST00000369682 10885 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 ZFAT-201ENST00000377838 4597 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 FN1-212ENST00000446046 7952 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 SOX9-201ENST00000245479 3935 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 WASH2P-201ENST00000453662 1684 ntBASIC8.65□□□□□ -1.03
LINC00643Q86TS7 ZNF574-201ENST00000222339 3309 ntTSL 3 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 KLHDC4-205ENST00000446344 4444 ntBASIC8.65□□□□□ -1.03
LINC00643Q86TS7 ATP8A1-201ENST00000264449 8209 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 CWC22-202ENST00000410053 3280 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 ANO1-207ENST00000530676 3289 ntAPPRIS ALT2 TSL 2 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 ENO2-209ENST00000538763 1646 ntTSL 5 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 SLCO2B1-204ENST00000454962 3219 ntTSL 2 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 OR2B11-202ENST00000641149 6414 ntAPPRIS P1 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC8.65□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms