Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
USP39Q53GS9 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
USP39Q53GS9 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC14.34□□□□□ -0.11
USP39Q53GS9 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.34□□□□□ -0.11
USP39Q53GS9 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.34□□□□□ -0.11
USP39Q53GS9 RNA5SP406-201ENST00000516106 112 ntBASIC14.34□□□□□ -0.11
USP39Q53GS9 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC14.34□□□□□ -0.11
USP39Q53GS9 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC14.34□□□□□ -0.11
USP39Q53GS9 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
USP39Q53GS9 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.34□□□□□ -0.11
USP39Q53GS9 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
USP39Q53GS9 AC244250.3-201ENST00000620749 366 ntBASIC14.34□□□□□ -0.11
USP39Q53GS9 ST5-261ENST00000626808 1071 ntTSL 5 BASIC14.34□□□□□ -0.11
USP39Q53GS9 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.34□□□□□ -0.11
USP39Q53GS9 AC002472.4-201ENST00000641915 272 ntBASIC14.34□□□□□ -0.11
USP39Q53GS9 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 AC087386.2-201ENST00000623212 4637 ntBASIC14.34□□□□□ -0.11
USP39Q53GS9 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC14.34□□□□□ -0.11
USP39Q53GS9 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
USP39Q53GS9 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USP39Q53GS9 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
USP39Q53GS9 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
USP39Q53GS9 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
USP39Q53GS9 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USP39Q53GS9 AC092053.3-201ENST00000641308 4975 ntBASIC14.33□□□□□ -0.11
USP39Q53GS9 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
USP39Q53GS9 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC14.33□□□□□ -0.12
USP39Q53GS9 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 RGS5-216ENST00000449680 788 ntTSL 3 BASIC14.33□□□□□ -0.12
USP39Q53GS9 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.33□□□□□ -0.12
USP39Q53GS9 SCARNA12-201ENST00000459155 270 ntBASIC14.33□□□□□ -0.12
USP39Q53GS9 RN7SL396P-201ENST00000471086 295 ntBASIC14.33□□□□□ -0.12
USP39Q53GS9 AC026410.1-201ENST00000507366 1101 ntBASIC14.33□□□□□ -0.12
USP39Q53GS9 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 RN7SL596P-201ENST00000582123 288 ntBASIC14.33□□□□□ -0.12
USP39Q53GS9 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.33□□□□□ -0.12
USP39Q53GS9 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 LINC00244-201ENST00000625073 613 ntBASIC14.33□□□□□ -0.12
USP39Q53GS9 AC009145.4-201ENST00000625119 1294 ntBASIC14.33□□□□□ -0.12
USP39Q53GS9 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.33□□□□□ -0.12
USP39Q53GS9 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
USP39Q53GS9 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
USP39Q53GS9 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USP39Q53GS9 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.33□□□□□ -0.12
USP39Q53GS9 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms