Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 SARS-202ENST00000369923 1882 ntTSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC12.61□□□□□ -0.39
H3F3AP84243 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 USP31-203ENST00000567975 2142 ntTSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
H3F3AP84243 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.61□□□□□ -0.39
H3F3AP84243 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
H3F3AP84243 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 CROT-203ENST00000419147 2959 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 MARK2P16-201ENST00000605714 1723 ntBASIC12.6□□□□□ -0.39
H3F3AP84243 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
H3F3AP84243 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC12.6□□□□□ -0.39
H3F3AP84243 LINC00265-2P-201ENST00000413372 782 ntBASIC12.6□□□□□ -0.39
H3F3AP84243 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC12.6□□□□□ -0.39
H3F3AP84243 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC12.6□□□□□ -0.39
H3F3AP84243 RTN3P1-201ENST00000536295 711 ntBASIC12.6□□□□□ -0.39
H3F3AP84243 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC12.6□□□□□ -0.39
H3F3AP84243 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC12.6□□□□□ -0.39
H3F3AP84243 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC097724.1-201ENST00000609581 426 ntBASIC12.6□□□□□ -0.39
H3F3AP84243 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
H3F3AP84243 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.6□□□□□ -0.39
H3F3AP84243 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.6□□□□□ -0.39
H3F3AP84243 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC008620.2-201ENST00000510294 1569 ntBASIC12.6□□□□□ -0.39
H3F3AP84243 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
H3F3AP84243 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
H3F3AP84243 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 OR2K2-202ENST00000374428 1038 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms