Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MRE11P49959 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC16.57■□□□□ 0.24
MRE11P49959 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MRE11P49959 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MRE11P49959 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MRE11P49959 AL022313.4-201ENST00000562756 2046 ntBASIC16.57■□□□□ 0.24
MRE11P49959 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MRE11P49959 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 KRT8P19-201ENST00000551916 1455 ntBASIC16.56■□□□□ 0.24
MRE11P49959 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC16.56■□□□□ 0.24
MRE11P49959 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 AC114501.2-201ENST00000439631 535 ntBASIC16.56■□□□□ 0.24
MRE11P49959 AC114501.1-201ENST00000445949 172 ntBASIC16.56■□□□□ 0.24
MRE11P49959 AC104306.2-201ENST00000451877 341 ntBASIC16.56■□□□□ 0.24
MRE11P49959 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.56■□□□□ 0.24
MRE11P49959 SPDYE18-201ENST00000510091 1050 ntBASIC16.56■□□□□ 0.24
MRE11P49959 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.56■□□□□ 0.24
MRE11P49959 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.56■□□□□ 0.24
MRE11P49959 AC009955.4-201ENST00000597192 544 ntBASIC16.56■□□□□ 0.24
MRE11P49959 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 AC000095.1-201ENST00000603208 874 ntBASIC16.56■□□□□ 0.24
MRE11P49959 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 LINC00638-201ENST00000555578 2518 ntBASIC16.56■□□□□ 0.24
MRE11P49959 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
MRE11P49959 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC16.56■□□□□ 0.24
MRE11P49959 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
MRE11P49959 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
MRE11P49959 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
MRE11P49959 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
MRE11P49959 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC16.55■□□□□ 0.24
MRE11P49959 USP3-204ENST00000540797 5474 ntTSL 2 BASIC16.55■□□□□ 0.24
MRE11P49959 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 DNM1P41-201ENST00000623634 3350 ntBASIC16.55■□□□□ 0.24
MRE11P49959 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.55■□□□□ 0.24
MRE11P49959 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
MRE11P49959 RPL17P11-201ENST00000417593 544 ntBASIC16.55■□□□□ 0.24
MRE11P49959 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
MRE11P49959 AK2P2-201ENST00000439142 405 ntBASIC16.55■□□□□ 0.24
MRE11P49959 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.55■□□□□ 0.24
MRE11P49959 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.55■□□□□ 0.24
MRE11P49959 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.55■□□□□ 0.24
MRE11P49959 TPRX2P-201ENST00000535362 881 ntBASIC16.55■□□□□ 0.24
MRE11P49959 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
MRE11P49959 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms