Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CASC19-229ENST00000641418 1373 ntBASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 AC024075.2-201ENST00000598112 1473 ntBASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 PDIA3P1-201ENST00000471856 1510 ntBASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 STX1A-203ENST00000395155 783 ntTSL 2 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 TPRG1-AS2-201ENST00000425454 479 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 AC136604.1-202ENST00000425471 771 ntBASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 MIR6775-201ENST00000617557 69 ntBASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
DEPDC4Q8N2C3 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 MARK2P9-201ENST00000430958 1727 ntBASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 LRRC59-203ENST00000576448 1531 ntBASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AP002761.4-201ENST00000565433 3361 ntBASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 FAM21FP-201ENST00000426241 1131 ntBASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms