Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.79■□□□□ 0.12
CIITAP33076 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC15.78■□□□□ 0.12
CIITAP33076 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.78■□□□□ 0.12
CIITAP33076 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.78■□□□□ 0.12
CIITAP33076 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.78■□□□□ 0.12
CIITAP33076 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.78■□□□□ 0.12
CIITAP33076 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC15.78■□□□□ 0.12
CIITAP33076 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
CIITAP33076 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.78■□□□□ 0.12
CIITAP33076 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC15.78■□□□□ 0.12
CIITAP33076 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CIITAP33076 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 AL354861.1-201ENST00000445213 355 ntBASIC15.78■□□□□ 0.12
CIITAP33076 STK24P1-201ENST00000455035 1291 ntBASIC15.78■□□□□ 0.12
CIITAP33076 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC15.78■□□□□ 0.12
CIITAP33076 PRSS3P1-201ENST00000503996 742 ntBASIC15.78■□□□□ 0.12
CIITAP33076 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC15.78■□□□□ 0.12
CIITAP33076 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC15.78■□□□□ 0.12
CIITAP33076 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 AL009176.1-201ENST00000607876 650 ntBASIC15.78■□□□□ 0.12
CIITAP33076 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC15.78■□□□□ 0.12
CIITAP33076 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
CIITAP33076 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CIITAP33076 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
CIITAP33076 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.77■□□□□ 0.12
CIITAP33076 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.77■□□□□ 0.12
CIITAP33076 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CIITAP33076 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC15.77■□□□□ 0.12
CIITAP33076 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC15.77■□□□□ 0.12
CIITAP33076 BEND3P1-201ENST00000421591 1944 ntBASIC15.77■□□□□ 0.12
CIITAP33076 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 OR52M2P-201ENST00000414298 959 ntBASIC15.77■□□□□ 0.12
CIITAP33076 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 IGHV1-12-201ENST00000518307 205 ntBASIC15.77■□□□□ 0.12
CIITAP33076 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
CIITAP33076 AC068867.1-201ENST00000559855 150 ntBASIC15.77■□□□□ 0.12
CIITAP33076 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC15.77■□□□□ 0.12
CIITAP33076 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.77■□□□□ 0.12
CIITAP33076 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.77■□□□□ 0.12
CIITAP33076 AC140113.1-201ENST00000603467 169 ntBASIC15.77■□□□□ 0.12
CIITAP33076 AC012073.1-201ENST00000606114 1108 ntBASIC15.77■□□□□ 0.12
CIITAP33076 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 AL359091.4-201ENST00000610052 409 ntBASIC15.77■□□□□ 0.12
CIITAP33076 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
CIITAP33076 COX6A1P2-201ENST00000620597 330 ntBASIC15.77■□□□□ 0.12
CIITAP33076 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC15.77■□□□□ 0.12
CIITAP33076 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CIITAP33076 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
CIITAP33076 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CIITAP33076 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.77■□□□□ 0.11
CIITAP33076 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
CIITAP33076 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CIITAP33076 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CIITAP33076 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC15.77■□□□□ 0.11
CIITAP33076 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CIITAP33076 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC15.77■□□□□ 0.11
CIITAP33076 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CIITAP33076 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
CIITAP33076 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CIITAP33076 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CIITAP33076 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms