Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC16.63■□□□□ 0.25
HMGB1P09429 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 ZNF767P-206ENST00000513792 565 ntBASIC16.63■□□□□ 0.25
HMGB1P09429 ALG1L13P-202ENST00000519320 584 ntBASIC16.63■□□□□ 0.25
HMGB1P09429 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
HMGB1P09429 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HMGB1P09429 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGB1P09429 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HMGB1P09429 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 AL358781.1-202ENST00000321081 1360 ntBASIC16.63■□□□□ 0.25
HMGB1P09429 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGB1P09429 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 ATL2-204ENST00000406122 2864 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
HMGB1P09429 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
HMGB1P09429 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB1P09429 BANF1P3-201ENST00000412556 261 ntBASIC16.62■□□□□ 0.25
HMGB1P09429 ISCA2P1-201ENST00000425548 448 ntBASIC16.62■□□□□ 0.25
HMGB1P09429 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB1P09429 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB1P09429 AKR7A2P1-201ENST00000460134 915 ntBASIC16.62■□□□□ 0.25
HMGB1P09429 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGB1P09429 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 NDUFV2P1-201ENST00000596415 907 ntBASIC16.62■□□□□ 0.25
HMGB1P09429 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 MIR6769A-201ENST00000617340 73 ntBASIC16.62■□□□□ 0.25
HMGB1P09429 AC091544.8-201ENST00000619490 361 ntBASIC16.62■□□□□ 0.25
HMGB1P09429 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
HMGB1P09429 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.62■□□□□ 0.25
HMGB1P09429 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HMGB1P09429 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGB1P09429 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 F2-205ENST00000530231 1849 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms