Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.75□□□□□ -0.05
RB1P06400 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 EML1-203ENST00000334192 4064 ntTSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
RB1P06400 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
RB1P06400 GGTLC4P-201ENST00000402176 664 ntBASIC14.75□□□□□ -0.05
RB1P06400 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 AC041040.1-201ENST00000425197 460 ntBASIC14.75□□□□□ -0.05
RB1P06400 AC010086.2-201ENST00000428616 226 ntBASIC14.75□□□□□ -0.05
RB1P06400 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 AP000533.1-201ENST00000456143 1177 ntBASIC14.75□□□□□ -0.05
RB1P06400 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 HNRNPA3P6-201ENST00000472163 1006 ntBASIC14.75□□□□□ -0.05
RB1P06400 AC147876.1-201ENST00000504408 322 ntBASIC14.75□□□□□ -0.05
RB1P06400 AC113347.2-201ENST00000512350 279 ntBASIC14.75□□□□□ -0.05
RB1P06400 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC14.75□□□□□ -0.05
RB1P06400 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC14.75□□□□□ -0.05
RB1P06400 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC14.75□□□□□ -0.05
RB1P06400 KRT8P34-201ENST00000577607 1044 ntBASIC14.75□□□□□ -0.05
RB1P06400 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 AC090505.1-201ENST00000430515 1834 ntBASIC14.75□□□□□ -0.05
RB1P06400 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.75□□□□□ -0.05
RB1P06400 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RB1P06400 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.75□□□□□ -0.05
RB1P06400 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
RB1P06400 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC14.74□□□□□ -0.05
RB1P06400 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.74□□□□□ -0.05
RB1P06400 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
RB1P06400 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 AIG1-203ENST00000367596 559 ntTSL 2 BASIC14.74□□□□□ -0.05
RB1P06400 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC14.74□□□□□ -0.05
RB1P06400 AL136084.1-201ENST00000449172 318 ntBASIC14.74□□□□□ -0.05
RB1P06400 VDAC1P11-201ENST00000458323 852 ntBASIC14.74□□□□□ -0.05
RB1P06400 RPSAP70-201ENST00000504462 864 ntBASIC14.74□□□□□ -0.05
RB1P06400 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
RB1P06400 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC14.74□□□□□ -0.05
RB1P06400 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.74□□□□□ -0.05
RB1P06400 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.74□□□□□ -0.05
RB1P06400 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.74□□□□□ -0.05
RB1P06400 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
RB1P06400 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.74□□□□□ -0.05
RB1P06400 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
RB1P06400 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.73□□□□□ -0.05
RB1P06400 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RB1P06400 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RB1P06400 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RB1P06400 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RB1P06400 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.73□□□□□ -0.05
RB1P06400 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms