Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
KCNIP3Q9Y2W7 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
KCNIP3Q9Y2W7 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
KCNIP3Q9Y2W7 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC11.92□□□□□ -0.5
KCNIP3Q9Y2W7 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
KCNIP3Q9Y2W7 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC11.92□□□□□ -0.5
KCNIP3Q9Y2W7 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 KCNAB2-206ENST00000378097 4201 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 RBM12B-201ENST00000399300 7269 ntAPPRIS P2 TSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 COL11A1-210ENST00000512756 5442 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 ABCC3-201ENST00000285238 5716 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 TREML5P-201ENST00000421694 576 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 COX10-202ENST00000429152 875 ntTSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AL035414.1-201ENST00000451327 857 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SPDYE18-201ENST00000510091 1050 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 DOC2GP-202ENST00000514950 1163 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AC068587.3-201ENST00000526613 355 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 STOM-203ENST00000538954 1257 ntTSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AC023310.3-201ENST00000557027 670 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AC100756.1-201ENST00000562736 682 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AC138749.3-201ENST00000567691 622 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 AC116165.1-201ENST00000611806 668 ntBASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 ESR2-213ENST00000557772 5458 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SFMBT2-201ENST00000361972 7922 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 ZNF629-201ENST00000262525 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
KCNIP3Q9Y2W7 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 CACNA1F-203ENST00000376265 6070 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 ABCA3-201ENST00000301732 6609 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 CLUHP2-201ENST00000426660 1303 ntBASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 RBM33-203ENST00000341148 7058 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 AC061965.1-201ENST00000560524 1465 ntBASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 LINC01165-201ENST00000445190 1623 ntBASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 REV3L-201ENST00000358835 10815 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 RAP1GAP2-201ENST00000254695 6661 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 CCDC14-220ENST00000488653 4156 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 AL022342.1-201ENST00000400363 863 ntBASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 TSEN15P1-201ENST00000423257 515 ntBASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 MSNP1-201ENST00000511640 1732 ntBASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 AC008761.3-201ENST00000624803 892 ntBASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
KCNIP3Q9Y2W7 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms