Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPL29P2-202ENST00000498671 657 ntBASIC13.46□□□□□ -0.25
VPS13AQ96RL7 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 AC253536.1-201ENST00000437021 315 ntBASIC13.46□□□□□ -0.25
VPS13AQ96RL7 AL512310.5-201ENST00000551999 515 ntBASIC13.46□□□□□ -0.25
VPS13AQ96RL7 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 LINC01615-203ENST00000634877 673 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 SIGLEC17P-204ENST00000618545 1517 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
VPS13AQ96RL7 LINC00638-201ENST00000555578 2518 ntBASIC13.46□□□□□ -0.26
VPS13AQ96RL7 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 AC012066.1-201ENST00000439252 694 ntBASIC13.46□□□□□ -0.26
VPS13AQ96RL7 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 AC133555.4-201ENST00000569081 152 ntBASIC13.46□□□□□ -0.26
VPS13AQ96RL7 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 AL133551.1-201ENST00000610279 1222 ntBASIC13.46□□□□□ -0.26
VPS13AQ96RL7 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
VPS13AQ96RL7 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AL356583.1-201ENST00000398739 1371 ntBASIC13.45□□□□□ -0.26
VPS13AQ96RL7 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 PMF1-201ENST00000368273 884 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 APOO-201ENST00000379226 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 RPSAP61-201ENST00000412542 878 ntBASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 HNRNPA1P7-201ENST00000521273 963 ntBASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 RBP1-206ENST00000617459 667 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AC079250.1-201ENST00000456046 531 ntBASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
VPS13AQ96RL7 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms