Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 RPS2P32-201ENST00000439199 892 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 CTBP2P5-201ENST00000454986 1264 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 AC022137.2-201ENST00000503482 481 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 HMGB1P8-201ENST00000558211 949 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 AC027281.2-201ENST00000623856 713 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 MKRN5P-201ENST00000445263 1467 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 AC064801.2-201ENST00000625052 1303 ntBASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
DEPDC4Q8N2C3 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 USP17L6P-201ENST00000382470 1197 ntBASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 AL121578.1-201ENST00000428051 892 ntBASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 CROCCP4-201ENST00000457096 498 ntBASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 AP001002.3-201ENST00000623482 206 ntBASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 CES1P1-201ENST00000421606 1704 ntBASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 AC131902.2-201ENST00000566892 2172 ntBASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
DEPDC4Q8N2C3 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms