Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 HMGA1P1-201ENST00000415560 1062 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 AC005034.1-201ENST00000426657 489 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC12.49□□□□□ -0.41
CX3CR1P49238 KRT18P15-201ENST00000458108 1291 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 ACA64.2-201ENST00000459014 129 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC12.49□□□□□ -0.41
CX3CR1P49238 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC12.49□□□□□ -0.41
CX3CR1P49238 AC003686.1-201ENST00000550956 1034 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 DUX4L45-201ENST00000566406 1057 ntBASIC12.49□□□□□ -0.41
CX3CR1P49238 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC12.49□□□□□ -0.41
CX3CR1P49238 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CX3CR1P49238 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CX3CR1P49238 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.48□□□□□ -0.41
CX3CR1P49238 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CX3CR1P49238 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CX3CR1P49238 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 TP73-201ENST00000346387 4854 ntTSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 AHCYP4-201ENST00000419201 1315 ntBASIC12.48□□□□□ -0.41
CX3CR1P49238 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
CX3CR1P49238 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC12.48□□□□□ -0.41
CX3CR1P49238 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
CX3CR1P49238 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC12.48□□□□□ -0.41
CX3CR1P49238 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC12.48□□□□□ -0.41
CX3CR1P49238 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 GPR53P-205ENST00000457298 1084 ntBASIC12.48□□□□□ -0.41
CX3CR1P49238 AC021723.1-201ENST00000486306 515 ntBASIC12.48□□□□□ -0.41
CX3CR1P49238 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CX3CR1P49238 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC12.48□□□□□ -0.41
CX3CR1P49238 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC12.48□□□□□ -0.41
CX3CR1P49238 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC12.48□□□□□ -0.41
CX3CR1P49238 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC12.48□□□□□ -0.41
CX3CR1P49238 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 AC008805.1-201ENST00000590892 364 ntBASIC12.48□□□□□ -0.41
CX3CR1P49238 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CX3CR1P49238 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.48□□□□□ -0.41
CX3CR1P49238 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC12.48□□□□□ -0.41
CX3CR1P49238 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
CX3CR1P49238 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 AC073957.3-201ENST00000609998 6758 ntBASIC12.48□□□□□ -0.41
CX3CR1P49238 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CX3CR1P49238 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CX3CR1P49238 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CR1P49238 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CR1P49238 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.47□□□□□ -0.41
CX3CR1P49238 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
CX3CR1P49238 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
CX3CR1P49238 AC007952.5-201ENST00000572818 1486 ntBASIC12.47□□□□□ -0.41
CX3CR1P49238 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
CX3CR1P49238 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC12.47□□□□□ -0.41
CX3CR1P49238 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC12.47□□□□□ -0.41
CX3CR1P49238 AC068760.1-201ENST00000493579 1953 ntBASIC12.47□□□□□ -0.41
CX3CR1P49238 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CR1P49238 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms