Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.36□□□□□ -0.43
COL8A1P27658 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
COL8A1P27658 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL8A1P27658 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC12.35□□□□□ -0.43
COL8A1P27658 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
COL8A1P27658 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
COL8A1P27658 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC12.35□□□□□ -0.43
COL8A1P27658 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 TREX1-203ENST00000456089 629 ntTSL 3 BASIC12.35□□□□□ -0.43
COL8A1P27658 TPT1P6-201ENST00000458298 514 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 AC108724.1-201ENST00000481669 352 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC12.35□□□□□ -0.43
COL8A1P27658 AL139353.2-202ENST00000502430 1213 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 MBP-230ENST00000528160 584 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 AL132994.1-201ENST00000554098 400 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC12.35□□□□□ -0.43
COL8A1P27658 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC12.35□□□□□ -0.43
COL8A1P27658 AL365223.1-201ENST00000574864 1297 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 SNORD3B-1-201ENST00000577988 758 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 DRG2-220ENST00000583355 891 ntTSL 3 BASIC12.35□□□□□ -0.43
COL8A1P27658 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC12.35□□□□□ -0.43
COL8A1P27658 AC005274.1-201ENST00000623460 802 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 AC020904.3-201ENST00000624199 442 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
COL8A1P27658 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 AC009093.10-201ENST00000641956 1442 ntBASIC12.35□□□□□ -0.43
COL8A1P27658 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.35□□□□□ -0.43
COL8A1P27658 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
COL8A1P27658 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
COL8A1P27658 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.34□□□□□ -0.43
COL8A1P27658 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.34□□□□□ -0.43
COL8A1P27658 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC12.34□□□□□ -0.43
COL8A1P27658 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
COL8A1P27658 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms