Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDGFBP01127 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDGFBP01127 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
PDGFBP01127 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.18
PDGFBP01127 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDGFBP01127 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.96□□□□□ -0.18
PDGFBP01127 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDGFBP01127 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
PDGFBP01127 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
PDGFBP01127 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDGFBP01127 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
PDGFBP01127 AC097474.1-201ENST00000506481 1371 ntBASIC13.96□□□□□ -0.18
PDGFBP01127 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDGFBP01127 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
PDGFBP01127 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 AC068760.1-201ENST00000493579 1953 ntBASIC13.95□□□□□ -0.18
PDGFBP01127 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.95□□□□□ -0.18
PDGFBP01127 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 POP5-201ENST00000341039 913 ntTSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC13.95□□□□□ -0.18
PDGFBP01127 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC13.95□□□□□ -0.18
PDGFBP01127 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC13.95□□□□□ -0.18
PDGFBP01127 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC13.95□□□□□ -0.18
PDGFBP01127 AC041040.1-201ENST00000425197 460 ntBASIC13.95□□□□□ -0.18
PDGFBP01127 RN7SL794P-201ENST00000469816 280 ntBASIC13.95□□□□□ -0.18
PDGFBP01127 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 CETN3-205ENST00000522842 664 ntTSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC13.95□□□□□ -0.18
PDGFBP01127 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
PDGFBP01127 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC13.95□□□□□ -0.18
PDGFBP01127 AC026120.2-201ENST00000617239 309 ntBASIC13.95□□□□□ -0.18
PDGFBP01127 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
PDGFBP01127 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDGFBP01127 AL354702.1-201ENST00000442006 1960 ntBASIC13.94□□□□□ -0.18
PDGFBP01127 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
PDGFBP01127 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PDGFBP01127 SNU13-204ENST00000402458 462 ntTSL 3 BASIC13.94□□□□□ -0.18
PDGFBP01127 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 AC079250.1-201ENST00000456046 531 ntBASIC13.94□□□□□ -0.18
PDGFBP01127 RN7SL363P-201ENST00000482412 273 ntBASIC13.94□□□□□ -0.18
PDGFBP01127 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC13.94□□□□□ -0.18
PDGFBP01127 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC13.94□□□□□ -0.18
PDGFBP01127 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms