Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.05■□□□□ 0.8
VSX1Q9NZR4 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.05■□□□□ 0.8
VSX1Q9NZR4 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.05■□□□□ 0.8
VSX1Q9NZR4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VSX1Q9NZR4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.05■□□□□ 0.8
VSX1Q9NZR4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VSX1Q9NZR4 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
VSX1Q9NZR4 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VSX1Q9NZR4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 AC021242.3-201ENST00000607598 1377 ntBASIC20.03■□□□□ 0.8
VSX1Q9NZR4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
VSX1Q9NZR4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VSX1Q9NZR4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
VSX1Q9NZR4 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.01■□□□□ 0.79
VSX1Q9NZR4 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
VSX1Q9NZR4 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VSX1Q9NZR4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VSX1Q9NZR4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20■□□□□ 0.79
VSX1Q9NZR4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20■□□□□ 0.79
VSX1Q9NZR4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20■□□□□ 0.79
VSX1Q9NZR4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VSX1Q9NZR4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
VSX1Q9NZR4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VSX1Q9NZR4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 MIR6722-201ENST00000617286 78 ntBASIC19.99■□□□□ 0.79
VSX1Q9NZR4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VSX1Q9NZR4 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 BX664725.1-201ENST00000438252 379 ntBASIC19.98■□□□□ 0.79
VSX1Q9NZR4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
VSX1Q9NZR4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.97■□□□□ 0.79
VSX1Q9NZR4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms