Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
DDX56Q9NY93 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
DDX56Q9NY93 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.43■■□□□ 1.34
DDX56Q9NY93 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.43■■□□□ 1.34
DDX56Q9NY93 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
DDX56Q9NY93 AC021242.3-201ENST00000607598 1377 ntBASIC23.42■■□□□ 1.34
DDX56Q9NY93 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.42■■□□□ 1.34
DDX56Q9NY93 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
DDX56Q9NY93 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.42■■□□□ 1.34
DDX56Q9NY93 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
DDX56Q9NY93 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.42■■□□□ 1.34
DDX56Q9NY93 BX664725.1-201ENST00000438252 379 ntBASIC23.42■■□□□ 1.34
DDX56Q9NY93 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
DDX56Q9NY93 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
DDX56Q9NY93 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
DDX56Q9NY93 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
DDX56Q9NY93 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.41■■□□□ 1.34
DDX56Q9NY93 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
DDX56Q9NY93 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
DDX56Q9NY93 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
DDX56Q9NY93 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.41■■□□□ 1.34
DDX56Q9NY93 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.41■■□□□ 1.34
DDX56Q9NY93 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.41■■□□□ 1.34
DDX56Q9NY93 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.41■■□□□ 1.34
DDX56Q9NY93 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
DDX56Q9NY93 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DDX56Q9NY93 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.4■■□□□ 1.34
DDX56Q9NY93 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.4■■□□□ 1.34
DDX56Q9NY93 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
DDX56Q9NY93 MIR6722-201ENST00000617286 78 ntBASIC23.4■■□□□ 1.34
DDX56Q9NY93 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
DDX56Q9NY93 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DDX56Q9NY93 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DDX56Q9NY93 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DDX56Q9NY93 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DDX56Q9NY93 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
DDX56Q9NY93 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
DDX56Q9NY93 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.39■■□□□ 1.33
DDX56Q9NY93 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.39■■□□□ 1.33
DDX56Q9NY93 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.39■■□□□ 1.33
DDX56Q9NY93 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
DDX56Q9NY93 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
DDX56Q9NY93 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
DDX56Q9NY93 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
DDX56Q9NY93 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
DDX56Q9NY93 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
DDX56Q9NY93 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.38■■□□□ 1.33
DDX56Q9NY93 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.38■■□□□ 1.33
DDX56Q9NY93 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.38■■□□□ 1.33
DDX56Q9NY93 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.38■■□□□ 1.33
DDX56Q9NY93 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
DDX56Q9NY93 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
DDX56Q9NY93 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX56Q9NY93 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX56Q9NY93 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.37■■□□□ 1.33
DDX56Q9NY93 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.37■■□□□ 1.33
DDX56Q9NY93 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX56Q9NY93 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.37■■□□□ 1.33
DDX56Q9NY93 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.37■■□□□ 1.33
DDX56Q9NY93 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
DDX56Q9NY93 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
DDX56Q9NY93 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
DDX56Q9NY93 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.36■■□□□ 1.33
DDX56Q9NY93 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
DDX56Q9NY93 C1orf229-201ENST00000623686 2258 ntBASIC23.36■■□□□ 1.33
DDX56Q9NY93 AC005703.6-201ENST00000623265 1329 ntBASIC23.36■■□□□ 1.33
DDX56Q9NY93 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX56Q9NY93 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX56Q9NY93 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
DDX56Q9NY93 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.36■■□□□ 1.33
DDX56Q9NY93 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX56Q9NY93 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
DDX56Q9NY93 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
DDX56Q9NY93 AC233723.2-201ENST00000623798 2106 ntBASIC23.35■■□□□ 1.33
DDX56Q9NY93 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
DDX56Q9NY93 AL353803.4-201ENST00000565882 1934 ntBASIC23.35■■□□□ 1.33
DDX56Q9NY93 AC079834.2-201ENST00000609776 1949 ntBASIC23.35■■□□□ 1.33
DDX56Q9NY93 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
DDX56Q9NY93 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX56Q9NY93 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX56Q9NY93 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX56Q9NY93 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
DDX56Q9NY93 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
DDX56Q9NY93 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
DDX56Q9NY93 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX56Q9NY93 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms