Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 RARRES2P2-201ENST00000394842 485 ntBASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CHMP1AQ9HD42 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 AL022069.1-201ENST00000568025 1636 ntBASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP1AQ9HD42 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 ANOS2P-203ENST00000472227 1816 ntBASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP1AQ9HD42 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP1AQ9HD42 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP1AQ9HD42 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 LONRF2P2-201ENST00000439212 571 ntBASIC19.16■□□□□ 0.66
CHMP1AQ9HD42 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms