Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 MIR4508-201ENST00000584178 70 ntBASIC22.49■■□□□ 1.19
CPNE1Q99829 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
CPNE1Q99829 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CPNE1Q99829 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
CPNE1Q99829 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.49■■□□□ 1.19
CPNE1Q99829 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.49■■□□□ 1.19
CPNE1Q99829 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CPNE1Q99829 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
CPNE1Q99829 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CPNE1Q99829 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CPNE1Q99829 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.48■■□□□ 1.19
CPNE1Q99829 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.48■■□□□ 1.19
CPNE1Q99829 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.48■■□□□ 1.19
CPNE1Q99829 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
CPNE1Q99829 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CPNE1Q99829 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CPNE1Q99829 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
CPNE1Q99829 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC22.47■■□□□ 1.19
CPNE1Q99829 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
CPNE1Q99829 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC22.47■■□□□ 1.19
CPNE1Q99829 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CPNE1Q99829 GUSBP5-202ENST00000510805 1989 ntBASIC22.47■■□□□ 1.19
CPNE1Q99829 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.46■■□□□ 1.19
CPNE1Q99829 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CPNE1Q99829 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
CPNE1Q99829 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC22.46■■□□□ 1.19
CPNE1Q99829 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CPNE1Q99829 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CPNE1Q99829 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
CPNE1Q99829 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.46■■□□□ 1.19
CPNE1Q99829 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CPNE1Q99829 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.46■■□□□ 1.19
CPNE1Q99829 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.19
CPNE1Q99829 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.18
CPNE1Q99829 EP400NL-214ENST00000641289 2402 ntBASIC22.45■■□□□ 1.18
CPNE1Q99829 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.45■■□□□ 1.18
CPNE1Q99829 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
CPNE1Q99829 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CPNE1Q99829 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CPNE1Q99829 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CPNE1Q99829 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.45■■□□□ 1.18
CPNE1Q99829 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CPNE1Q99829 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
CPNE1Q99829 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.44■■□□□ 1.18
CPNE1Q99829 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.44■■□□□ 1.18
CPNE1Q99829 AC012354.3-201ENST00000623734 483 ntBASIC22.44■■□□□ 1.18
CPNE1Q99829 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
CPNE1Q99829 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CPNE1Q99829 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CPNE1Q99829 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.43■■□□□ 1.18
CPNE1Q99829 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CPNE1Q99829 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
CPNE1Q99829 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CPNE1Q99829 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.43■■□□□ 1.18
CPNE1Q99829 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CPNE1Q99829 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CPNE1Q99829 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
CPNE1Q99829 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.42■■□□□ 1.18
CPNE1Q99829 ESRRAP2-201ENST00000418437 1549 ntBASIC22.42■■□□□ 1.18
CPNE1Q99829 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.42■■□□□ 1.18
CPNE1Q99829 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.42■■□□□ 1.18
CPNE1Q99829 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CPNE1Q99829 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
CPNE1Q99829 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CPNE1Q99829 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.42■■□□□ 1.18
CPNE1Q99829 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CPNE1Q99829 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CPNE1Q99829 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CPNE1Q99829 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.41■■□□□ 1.18
CPNE1Q99829 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CPNE1Q99829 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CPNE1Q99829 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CPNE1Q99829 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CPNE1Q99829 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CPNE1Q99829 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CPNE1Q99829 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.41■■□□□ 1.18
CPNE1Q99829 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CPNE1Q99829 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CPNE1Q99829 AL353803.4-201ENST00000565882 1934 ntBASIC22.41■■□□□ 1.18
CPNE1Q99829 LINC00526-201ENST00000581067 1875 ntBASIC22.41■■□□□ 1.18
CPNE1Q99829 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
CPNE1Q99829 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
CPNE1Q99829 ECEL1P1-201ENST00000373592 1742 ntBASIC22.4■■□□□ 1.18
CPNE1Q99829 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CPNE1Q99829 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CPNE1Q99829 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.4■■□□□ 1.18
CPNE1Q99829 AC103834.1-201ENST00000520383 144 ntBASIC22.4■■□□□ 1.18
CPNE1Q99829 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.4■■□□□ 1.18
CPNE1Q99829 SNX5-217ENST00000606557 1087 ntBASIC22.4■■□□□ 1.18
CPNE1Q99829 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CPNE1Q99829 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
CPNE1Q99829 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
CPNE1Q99829 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms