Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD1Q96NR3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.17■□□□□ 0.98
PTCHD1Q96NR3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.17■□□□□ 0.98
PTCHD1Q96NR3 C17orf82-201ENST00000623772 1530 ntBASIC21.17■□□□□ 0.98
PTCHD1Q96NR3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD1Q96NR3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD1Q96NR3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD1Q96NR3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
PTCHD1Q96NR3 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD1Q96NR3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD1Q96NR3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PTCHD1Q96NR3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PTCHD1Q96NR3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.14■□□□□ 0.98
PTCHD1Q96NR3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.14■□□□□ 0.97
PTCHD1Q96NR3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
PTCHD1Q96NR3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 AC099791.2-201ENST00000605725 427 ntBASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTCHD1Q96NR3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 AC096631.2-201ENST00000436136 790 ntBASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 AC092171.4-201ENST00000609130 632 ntBASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTCHD1Q96NR3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 AC241377.3-202ENST00000626088 1088 ntBASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 AC241585.3-202ENST00000628937 1088 ntBASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 AC245100.8-202ENST00000629247 1058 ntBASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PTCHD1Q96NR3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTCHD1Q96NR3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms