Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.23■□□□□ 0.67
PTX4Q96A99 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTX4Q96A99 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 LONRF2P2-201ENST00000439212 571 ntBASIC19.22■□□□□ 0.67
PTX4Q96A99 MIR6765-201ENST00000614092 87 ntBASIC19.22■□□□□ 0.67
PTX4Q96A99 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTX4Q96A99 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTX4Q96A99 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTX4Q96A99 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTX4Q96A99 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTX4Q96A99 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTX4Q96A99 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.21■□□□□ 0.67
PTX4Q96A99 SPCS2P3-201ENST00000500401 656 ntBASIC19.21■□□□□ 0.67
PTX4Q96A99 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTX4Q96A99 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PTX4Q96A99 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
PTX4Q96A99 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.2■□□□□ 0.66
PTX4Q96A99 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
PTX4Q96A99 AC079630.1-202ENST00000618127 1840 ntBASIC19.2■□□□□ 0.66
PTX4Q96A99 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
PTX4Q96A99 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PTX4Q96A99 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTX4Q96A99 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.19■□□□□ 0.66
PTX4Q96A99 AL592293.1-201ENST00000502889 1188 ntBASIC19.19■□□□□ 0.66
PTX4Q96A99 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.19■□□□□ 0.66
PTX4Q96A99 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.19■□□□□ 0.66
PTX4Q96A99 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.19■□□□□ 0.66
PTX4Q96A99 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTX4Q96A99 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.19■□□□□ 0.66
PTX4Q96A99 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.18■□□□□ 0.66
PTX4Q96A99 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.18■□□□□ 0.66
PTX4Q96A99 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTX4Q96A99 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
PTX4Q96A99 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PTX4Q96A99 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTX4Q96A99 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.18■□□□□ 0.66
PTX4Q96A99 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTX4Q96A99 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.18■□□□□ 0.66
PTX4Q96A99 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTX4Q96A99 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
PTX4Q96A99 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTX4Q96A99 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.17■□□□□ 0.66
PTX4Q96A99 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTX4Q96A99 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.17■□□□□ 0.66
PTX4Q96A99 AC092053.2-201ENST00000640557 1818 ntBASIC19.17■□□□□ 0.66
PTX4Q96A99 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTX4Q96A99 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
PTX4Q96A99 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTX4Q96A99 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTX4Q96A99 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PTX4Q96A99 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTX4Q96A99 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PTX4Q96A99 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PTX4Q96A99 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
PTX4Q96A99 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTX4Q96A99 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTX4Q96A99 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTX4Q96A99 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PTX4Q96A99 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PTX4Q96A99 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTX4Q96A99 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.16■□□□□ 0.66
PTX4Q96A99 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTX4Q96A99 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
PTX4Q96A99 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTX4Q96A99 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTX4Q96A99 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
PTX4Q96A99 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.15■□□□□ 0.66
PTX4Q96A99 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTX4Q96A99 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PTX4Q96A99 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTX4Q96A99 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTX4Q96A99 AC139530.1-201ENST00000575312 1977 ntBASIC19.15■□□□□ 0.66
PTX4Q96A99 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTX4Q96A99 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PTX4Q96A99 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTX4Q96A99 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.14■□□□□ 0.65
PTX4Q96A99 AC022616.5-201ENST00000518796 181 ntBASIC19.14■□□□□ 0.65
PTX4Q96A99 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms