Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PDLIM3Q53GG5 AL161729.1-201ENST00000604104 1402 ntBASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 ZNRF2P3-201ENST00000424200 374 ntBASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 AC133561.4-201ENST00000566112 224 ntBASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 AC019171.1-201ENST00000601251 1056 ntBASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PDLIM3Q53GG5 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PDLIM3Q53GG5 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PDLIM3Q53GG5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 AC096631.2-201ENST00000436136 790 ntBASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PDLIM3Q53GG5 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PDLIM3Q53GG5 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms