Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
ZNF404Q494X3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.28■□□□□ 0.84
ZNF404Q494X3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
ZNF404Q494X3 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF404Q494X3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF404Q494X3 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
ZNF404Q494X3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
ZNF404Q494X3 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ZNF404Q494X3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
ZNF404Q494X3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF404Q494X3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF404Q494X3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
ZNF404Q494X3 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF404Q494X3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
ZNF404Q494X3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF404Q494X3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
ZNF404Q494X3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
ZNF404Q494X3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
ZNF404Q494X3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.26■□□□□ 0.83
ZNF404Q494X3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.26■□□□□ 0.83
ZNF404Q494X3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.26■□□□□ 0.83
ZNF404Q494X3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.26■□□□□ 0.83
ZNF404Q494X3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF404Q494X3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF404Q494X3 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF404Q494X3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
ZNF404Q494X3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF404Q494X3 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF404Q494X3 AC004987.1-201ENST00000428627 508 ntBASIC20.25■□□□□ 0.83
ZNF404Q494X3 ATP5G2P3-201ENST00000429083 425 ntBASIC20.25■□□□□ 0.83
ZNF404Q494X3 DUX4L9-201ENST00000449051 1259 ntBASIC20.25■□□□□ 0.83
ZNF404Q494X3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF404Q494X3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF404Q494X3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF404Q494X3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF404Q494X3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF404Q494X3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF404Q494X3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF404Q494X3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.24■□□□□ 0.83
ZNF404Q494X3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF404Q494X3 TSPY13P-201ENST00000338964 914 ntBASIC20.24■□□□□ 0.83
ZNF404Q494X3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
ZNF404Q494X3 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
ZNF404Q494X3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.24■□□□□ 0.83
ZNF404Q494X3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF404Q494X3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ZNF404Q494X3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
ZNF404Q494X3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF404Q494X3 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF404Q494X3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF404Q494X3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.23■□□□□ 0.83
ZNF404Q494X3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF404Q494X3 SPCS2P3-201ENST00000500401 656 ntBASIC20.23■□□□□ 0.83
ZNF404Q494X3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF404Q494X3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.23■□□□□ 0.83
ZNF404Q494X3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
ZNF404Q494X3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF404Q494X3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ZNF404Q494X3 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
ZNF404Q494X3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF404Q494X3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF404Q494X3 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
ZNF404Q494X3 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF404Q494X3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.22■□□□□ 0.83
ZNF404Q494X3 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.22■□□□□ 0.83
ZNF404Q494X3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF404Q494X3 AL033527.3-201ENST00000566366 1196 ntBASIC20.22■□□□□ 0.83
ZNF404Q494X3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.22■□□□□ 0.83
ZNF404Q494X3 AC018755.3-202ENST00000596210 929 ntBASIC20.22■□□□□ 0.83
ZNF404Q494X3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF404Q494X3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
ZNF404Q494X3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ZNF404Q494X3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF404Q494X3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms