Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
NKX3-2P78367 AC133637.1-201ENST00000624115 1537 ntBASIC25.17■■□□□ 1.62
NKX3-2P78367 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25.17■■□□□ 1.62
NKX3-2P78367 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25.17■■□□□ 1.62
NKX3-2P78367 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
NKX3-2P78367 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.17■■□□□ 1.62
NKX3-2P78367 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
NKX3-2P78367 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX3-2P78367 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX3-2P78367 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX3-2P78367 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
NKX3-2P78367 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC25.16■■□□□ 1.62
NKX3-2P78367 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC25.16■■□□□ 1.62
NKX3-2P78367 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
NKX3-2P78367 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC25.15■■□□□ 1.62
NKX3-2P78367 OR2I1P-207ENST00000453522 948 ntBASIC25.15■■□□□ 1.62
NKX3-2P78367 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NKX3-2P78367 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.15■■□□□ 1.62
NKX3-2P78367 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.15■■□□□ 1.62
NKX3-2P78367 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
NKX3-2P78367 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
NKX3-2P78367 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
NKX3-2P78367 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NKX3-2P78367 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NKX3-2P78367 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
NKX3-2P78367 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NKX3-2P78367 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NKX3-2P78367 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NKX3-2P78367 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
NKX3-2P78367 FP325331.1-202ENST00000623531 1380 ntBASIC25.14■■□□□ 1.61
NKX3-2P78367 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
NKX3-2P78367 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
NKX3-2P78367 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
NKX3-2P78367 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
NKX3-2P78367 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NKX3-2P78367 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
NKX3-2P78367 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NKX3-2P78367 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC25.13■■□□□ 1.61
NKX3-2P78367 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC25.13■■□□□ 1.61
NKX3-2P78367 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.13■■□□□ 1.61
NKX3-2P78367 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.13■■□□□ 1.61
NKX3-2P78367 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NKX3-2P78367 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NKX3-2P78367 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC25.12■■□□□ 1.61
NKX3-2P78367 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.12■■□□□ 1.61
NKX3-2P78367 CCDC92B-201ENST00000575506 885 ntBASIC25.12■■□□□ 1.61
NKX3-2P78367 TERF1P2-201ENST00000583350 1212 ntBASIC25.12■■□□□ 1.61
NKX3-2P78367 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.12■■□□□ 1.61
NKX3-2P78367 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
NKX3-2P78367 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NKX3-2P78367 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.12■■□□□ 1.61
NKX3-2P78367 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
NKX3-2P78367 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX3-2P78367 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NKX3-2P78367 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX3-2P78367 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX3-2P78367 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.11■■□□□ 1.61
NKX3-2P78367 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NKX3-2P78367 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX3-2P78367 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NKX3-2P78367 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NKX3-2P78367 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX3-2P78367 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.11■■□□□ 1.61
NKX3-2P78367 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
NKX3-2P78367 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC25.11■■□□□ 1.61
NKX3-2P78367 DUX4L4-201ENST00000566884 1269 ntBASIC25.11■■□□□ 1.61
NKX3-2P78367 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NKX3-2P78367 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC25.11■■□□□ 1.61
NKX3-2P78367 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NKX3-2P78367 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
NKX3-2P78367 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
NKX3-2P78367 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.1■■□□□ 1.61
NKX3-2P78367 MIR6084-201ENST00000622012 110 ntBASIC25.1■■□□□ 1.61
NKX3-2P78367 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX3-2P78367 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
NKX3-2P78367 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
NKX3-2P78367 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
NKX3-2P78367 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
NKX3-2P78367 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
NKX3-2P78367 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC25.1■■□□□ 1.61
NKX3-2P78367 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.1■■□□□ 1.61
NKX3-2P78367 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.09■■□□□ 1.61
NKX3-2P78367 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX3-2P78367 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
NKX3-2P78367 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC25.09■■□□□ 1.61
NKX3-2P78367 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.09■■□□□ 1.61
NKX3-2P78367 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
NKX3-2P78367 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.08■■□□□ 1.61
NKX3-2P78367 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
NKX3-2P78367 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
NKX3-2P78367 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.08■■□□□ 1.61
NKX3-2P78367 AP005435.1-201ENST00000529293 1178 ntBASIC25.08■■□□□ 1.61
NKX3-2P78367 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
NKX3-2P78367 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
NKX3-2P78367 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX3-2P78367 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
NKX3-2P78367 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.07■■□□□ 1.6
NKX3-2P78367 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX3-2P78367 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
NKX3-2P78367 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.07■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms