Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 LONRF2P2-201ENST00000439212 571 ntBASIC19.73■□□□□ 0.75
SOX2P48431 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.73■□□□□ 0.75
SOX2P48431 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.73■□□□□ 0.75
SOX2P48431 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SOX2P48431 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX2P48431 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SOX2P48431 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX2P48431 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX2P48431 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.72■□□□□ 0.75
SOX2P48431 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX2P48431 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX2P48431 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SOX2P48431 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX2P48431 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX2P48431 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX2P48431 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.72■□□□□ 0.75
SOX2P48431 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SOX2P48431 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SOX2P48431 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SOX2P48431 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SOX2P48431 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.71■□□□□ 0.75
SOX2P48431 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.71■□□□□ 0.75
SOX2P48431 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.71■□□□□ 0.75
SOX2P48431 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX2P48431 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
SOX2P48431 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX2P48431 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.7■□□□□ 0.74
SOX2P48431 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.7■□□□□ 0.74
SOX2P48431 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.7■□□□□ 0.74
SOX2P48431 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX2P48431 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX2P48431 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
SOX2P48431 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX2P48431 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX2P48431 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SOX2P48431 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SOX2P48431 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX2P48431 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SOX2P48431 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX2P48431 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX2P48431 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX2P48431 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SOX2P48431 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SOX2P48431 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SOX2P48431 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX2P48431 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
SOX2P48431 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX2P48431 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX2P48431 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX2P48431 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX2P48431 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SOX2P48431 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX2P48431 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX2P48431 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX2P48431 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SOX2P48431 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.67■□□□□ 0.74
SOX2P48431 AC011551.1-201ENST00000614101 683 ntBASIC19.67■□□□□ 0.74
SOX2P48431 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX2P48431 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX2P48431 ECEL1P1-201ENST00000373592 1742 ntBASIC19.67■□□□□ 0.74
SOX2P48431 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.67■□□□□ 0.74
SOX2P48431 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SOX2P48431 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SOX2P48431 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SOX2P48431 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SOX2P48431 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX2P48431 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX2P48431 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.66■□□□□ 0.74
SOX2P48431 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms